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MacClade Home Page

MacClade is a computer program for phylogenetic analysis written by David Maddison and Wayne Maddison. Its analytical strength is in studies of character evolution. It also provides many tools for entering and editing data and phylogenies, and for producing tree diagrams and charts. MacClade's source is now open and available. As of today, 27 January 2018, MacClade's source is available in a GitHub repository: https:/ github.com/MesquiteProject/MacClade. MacClade is 25 years old today. MacClade apparentl...

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MacClade Home Page | lab.bembidion.org Reviews

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MacClade is a computer program for phylogenetic analysis written by David Maddison and Wayne Maddison. Its analytical strength is in studies of character evolution. It also provides many tools for entering and editing data and phylogenies, and for producing tree diagrams and charts. MacClade's source is now open and available. As of today, 27 January 2018, MacClade's source is available in a GitHub repository: https:/ github.com/MesquiteProject/MacClade. MacClade is 25 years old today. MacClade apparentl...

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1 introduction

2 versions

3 authors

4 acquiring macclade

5 features

6 version 4

7 hidden features

8 full vs classroom

9 downloads

10 updaters

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MacClade Home Page | lab.bembidion.org Reviews

https://lab.bembidion.org

MacClade is a computer program for phylogenetic analysis written by David Maddison and Wayne Maddison. Its analytical strength is in studies of character evolution. It also provides many tools for entering and editing data and phylogenies, and for producing tree diagrams and charts. MacClade's source is now open and available. As of today, 27 January 2018, MacClade's source is available in a GitHub repository: https:/ github.com/MesquiteProject/MacClade. MacClade is 25 years old today. MacClade apparentl...

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lab.bembidion.org

1

Features added in versions 4.01 and later

http://www.lab.bembidion.org/newfeatures.html

Features added to MacClade 4 since version 4.0. David R. Maddison and Wayne P. Maddison. Here is a list of features added to MacClade since version 4.0 was released. The names of those who suggested each feature (if someone other than DRM and WPM) are given in parentheses after the feature. There are also additional minor features added. New features included in 4.01. MacClade can now automatically shift a sequence through the reading frame to minimize the number of stop codons. The data editor has the o...

2

Acquiring MacClade

http://www.lab.bembidion.org/acquiring.html

MacClade is no longer published by Sinauer Associates. MacClade is available as a free download.

3

Differences between Full and Classroom Versions

http://www.lab.bembidion.org/differences.html

Differences between the full and classroom versions of MacClade 4. There are a few features by which the full and classroom versions of MacClade differ. They are:. Features in the full version that are not present in the classroom version. The data editor has the option to flash sequences that are reverse complements to a selected block, using rRNA pairing rules (i.e., A or G are considered complementary to T/U). It allows up to a specified number of mismatches. The Shift Other to Match Selected feature.

4

MacClade 4 Features

http://www.lab.bembidion.org/macclade4news.html

Highlights of some new features in MacClade 4. The new version of MacClade will have many improvements in user-interface, as well as much more extensive tools for data manipulation. This page highlights a few of the changes, concerning:. List windows and the selection and manipulation of objects. There are many options for how data can be displayed. Here are two examples. You can ask MacClade to color data cells so that the patterns of state variation are more evident:. Tools in the Editor. Excises piece...

5

Introduction to MacClade

http://www.lab.bembidion.org/intro.html

Portions of this page are from the manual that accompanies MacClade. The MacClade CD comes with versions of the program MacClade for both MacOS X and earlier versions of the MacOS (7.5 through 9.2.2). The CD also contains a complete, 502-page manual in PDF format (with linked movies and examples). Examining character evolution on a tree in MacClade's tree window. A chart showing the relative frequencies of reconstructed changes between bases on a tree,. Morphological data in MacClade's editor. These scen...

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MacClade Home Page

MacClade is a computer program for phylogenetic analysis written by David Maddison and Wayne Maddison. Its analytical strength is in studies of character evolution. It also provides many tools for entering and editing data and phylogenies, and for producing tree diagrams and charts. MacClade's source is now open and available. As of today, 27 January 2018, MacClade's source is available in a GitHub repository: https:/ github.com/MesquiteProject/MacClade. MacClade is 25 years old today. MacClade apparentl...

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