manual.gromacs.org
GROMACS Online ReferenceMain Table of Contents. VERSION 5.0.7. Http:/ www.gromacs.org.
http://manual.gromacs.org/
Main Table of Contents. VERSION 5.0.7. Http:/ www.gromacs.org.
http://manual.gromacs.org/
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Main Table of Contents. VERSION 5.0.7. Http:/ www.gromacs.org.
manual.gromacs.org
GROMACS Programs by Topic
http://manual.gromacs.org/programs/bytopic.html
GROMACS Programs by Topic. Main Table of Contents. VERSION 5.0.7. GROMACS Programs by Topic. Calculate distances between pairs of positions. Compute solvent accessible surface area. Print general information about selections. Generating topologies and coordinates. Edit the box and write subgroups. Generate a primitive topology from coordinates. Insert molecules into existing vacancies. Multiply a conformation in 'random' orientations. Generate monoatomic ions on energetically favorable positions. Estimat...
GROMACS Programs by Name
http://manual.gromacs.org/programs/byname.html
GROMACS Programs by Name. Main Table of Contents. VERSION 5.0.7. Cluster structures from Autodock runs. Calculate distributions and correlations for angles and dihedrals. Calculate free energy difference estimates through Bennett's acceptance ratio. Analyze bundles of axes, e.g., helices. Check and compare files. Calculate everything you want to know about chi and other dihedrals. Calculate size distributions of atomic clusters. Fit two structures and calculates the RMSD. Make a modifed run-input file.
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GROMACS Online Reference
Main Table of Contents. VERSION 5.0.7. Http:/ www.gromacs.org.
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