mulpssm.mbu.iisc.ernet.in

MulPSSM - a searchable database of multiple PSSMs of structuraland sequence families

A searchable database of multiple PSSMs of structural and sequence families. MulPSSM is a database of multiple position specific scoring matrices of protein domain families with constant alignments. The paper explaining the MulPSSM database has been published in NAR database issue 2006 and can be accessed here : Nucleic Acids Research, 2006, Vol. 34, Database issue D243-D246. That use of Multiple PSSMs. In the Structural or Sequence Multiple PSSMs database. In the Sequence database. Contact Prof N. S...

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MulPSSM - a searchable database of multiple PSSMs of structuraland sequence families | mulpssm.mbu.iisc.ernet.in Reviews

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A searchable database of multiple PSSMs of structural and sequence families. MulPSSM is a database of multiple position specific scoring matrices of protein domain families with constant alignments. The paper explaining the MulPSSM database has been published in NAR database issue 2006 and can be accessed here : Nucleic Acids Research, 2006, Vol. 34, Database issue D243-D246. That use of Multiple PSSMs. In the Structural or Sequence Multiple PSSMs database. In the Sequence database. Contact Prof N. S...

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MulPSSM - a searchable database of multiple PSSMs of structuraland sequence families | mulpssm.mbu.iisc.ernet.in Reviews

https://mulpssm.mbu.iisc.ernet.in

A searchable database of multiple PSSMs of structural and sequence families. MulPSSM is a database of multiple position specific scoring matrices of protein domain families with constant alignments. The paper explaining the MulPSSM database has been published in NAR database issue 2006 and can be accessed here : Nucleic Acids Research, 2006, Vol. 34, Database issue D243-D246. That use of Multiple PSSMs. In the Structural or Sequence Multiple PSSMs database. In the Sequence database. Contact Prof N. S...

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mulpssm.mbu.iisc.ernet.in

1

Pfam family names and descriptions

http://mulpssm.mbu.iisc.ernet.in/pfam_names_Number.html

Browse through the Pfam families on this page. Search for keywords in families (multiple keywords not allowed, search is case-insensitive):. C-terminal domain of 1-Cys peroxiredoxin. 120 KDa Rickettsia surface antigen. D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain. D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain. 2-oxoacid dehydrogenases acyltransferase (catalytic domain). 23S rRNA-intervening sequence protein. Two-component sensor kinase N-terminal. 2 5 RNA ligase2.

2

MulPSSM database

http://mulpssm.mbu.iisc.ernet.in/pali_names_A.html

Browse through the Pali families on this page. Search for keywords in families (multiple keywords not allowed, search is case-insensitive):. Nerve tissue mini-hemoglobin (neural globin). Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain. Dihydropyrimidine dehydrogenase, N-terminal domain. GreA transcript cleavage protein, N-terminal domain. Ribosomal protein L29 (L29p). Valyl-tRNA synthetase (ValRS) C-terminal domain. Eukaryotic DNA topoisomerase I, dispensable insert domain.

3

BLAST Search

http://mulpssm.mbu.iisc.ernet.in/impala_pfam.html

Search for domains in your sequence using RPS-BLAST. Submit your amino acid sequence in fasta/Pearson.

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pauling.mbu.iisc.ac.in

N S Lab Useful links

http://pauling.mbu.iisc.ac.in/links.html

Proteins : Structure, Function and Evolutionary Group. NS LABPAGE SEARCH ENGINE. The universal protein resource. Consists of UniProtKB/Swiss-Prot (high-level annotation) and UniProtKB/TrEMBL (computer-annotated). Integrated Resources of Proteins Domains and Functional Sites. Database of protein families and domains. Structural and Functional Annotation of Protein Families. Protein families db (HMM derived) [Mirrors at JFRC (USA). CCBB (South Korea) Institute, UK. Protein Motif fingerprint db. Biomolecula...

nslab.mbu.iisc.ernet.in

N S Lab Useful links

http://nslab.mbu.iisc.ernet.in/links.html

Proteins : Structure, Function and Evolutionary Group. NS LABPAGE SEARCH ENGINE. The universal protein resource. Consists of UniProtKB/Swiss-Prot (high-level annotation) and UniProtKB/TrEMBL (computer-annotated). Integrated Resources of Proteins Domains and Functional Sites. Database of protein families and domains. Structural and Functional Annotation of Protein Families. Protein families db (HMM derived) [Mirrors at JFRC (USA). CCBB (South Korea) Institute, UK. Protein Motif fingerprint db. Biomolecula...

nslab.mbu.iisc.ernet.in

N S Lab Resources

http://nslab.mbu.iisc.ernet.in/resources.html

Proteins : Structure, Function and Evolutionary Group. The Databases and Servers developed in our lab:. A database of superfamily relationships between Pfam seqeunce families. Shashi B. Pandit, Dilip Gosar, S. Abhiman, S. Sujatha, Sayali S. Dixit, Natasha S. Mhatre, Pandit SB, Bhadra R, Gowri VS, Balaji S, Anand B, O.Krishnadev, V. S. Gowri, C. Sairam Swamy, Vaishnavi R., R. Sowdhamini and N.Srinivasan. SUPFAM v2.1 Webstats. Krupa A, Abhinandan K R., Anamika Krishanpal, Juliette Martin, and N.Sri...This ...

pauling.mbu.iisc.ac.in

N S Lab Resources

http://pauling.mbu.iisc.ac.in/resources.html

Proteins : Structure, Function and Evolutionary Group. The Databases and Servers developed in our lab:. A database of superfamily relationships between Pfam seqeunce families. Shashi B. Pandit, Dilip Gosar, S. Abhiman, S. Sujatha, Sayali S. Dixit, Natasha S. Mhatre, Pandit SB, Bhadra R, Gowri VS, Balaji S, Anand B, O.Krishnadev, V. S. Gowri, C. Sairam Swamy, Vaishnavi R., R. Sowdhamini and N.Srinivasan. SUPFAM v2.1 Webstats. Krupa A, Abhinandan K R., Anamika Krishanpal, Juliette Martin, and N.Sri...This ...

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mulpssm.mbu.iisc.ernet.in

MulPSSM - a searchable database of multiple PSSMs of structuraland sequence families

A searchable database of multiple PSSMs of structural and sequence families. MulPSSM is a database of multiple position specific scoring matrices of protein domain families with constant alignments. The paper explaining the MulPSSM database has been published in NAR database issue 2006 and can be accessed here : Nucleic Acids Research, 2006, Vol. 34, Database issue D243-D246. That use of Multiple PSSMs. In the Structural or Sequence Multiple PSSMs database. In the Sequence database. Contact Prof N. S...

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