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Nuclear Protein Database (NPD)

Nuclear Protein Database (NPD). NPD is a searchable database of information on proteins that are localised to the nucleus of vertebrate cells.

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Nuclear Protein Database (NPD) | npd.hgu.mrc.ac.uk Reviews
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Nuclear Protein Database (NPD). NPD is a searchable database of information on proteins that are localised to the nucleus of vertebrate cells.
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6 splicing speckles
7 OPT domains
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9 Polycomb
10 speckles
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Nuclear Protein Database (NPD) | npd.hgu.mrc.ac.uk Reviews

https://npd.hgu.mrc.ac.uk

Nuclear Protein Database (NPD). NPD is a searchable database of information on proteins that are localised to the nucleus of vertebrate cells.

INTERNAL PAGES

npd.hgu.mrc.ac.uk npd.hgu.mrc.ac.uk
1

Nuclear Protein Database (NPD)

http://npd.hgu.mrc.ac.uk/user/services

Or browse by compartment. Accessing NPD content via web services. The current version of the NPD offers both REST and SOAP web service access methods. Different content types are available by appending .csv or .xml to the URL. Also, the REST content can be accessed via a dedicated REST URL, which will default to XML output. For example, the URL for 1NP00017 could be entered either as ./user/1NP00017.xml, or you could use the rest URL directly, such as ./rest/1NP00017. SQLquery(string SQLquery) - output a...

2

Nuclear Protein Database (NPD)

http://npd.hgu.mrc.ac.uk/user/index.php

Or browse by compartment. The Nuclear Protein Database. The Nuclear Protein Database (NPD) is a searchable database of information on proteins that are localised to the nucleus of vertebrate cells. How to use the NPD. An introduction to each of the principal sub-nuclear compartments. What is in the NPD? Where the proteins have been found are reported. Also stored is information on the amino acid sequence, predicted protein size and isoelectric point, as well as any repeats, motifs or domains within t...

3

Nuclear Protein Database (NPD)

http://npd.hgu.mrc.ac.uk/user/domains

Or browse by compartment. Search the database for proteins containing a given motif or domain by clicking that domain/motif. Descriptions of that domain/motif appear where available. TRNA-specific and double-stranded RNA adenosine deaminase. ATP/GTP binding site motif A. Bromo adjacent homology domain. Baculoviral inhibition of apoptosis protein repeat. Basic region leucin zipper. CBFD NFYB HMF ). Core binding factor- beta subunit ). Cyclophilin motif (peptidyl-prolyl cis-trans isomerase). ENDO3c)- Helix...

4

Nuclear Protein Database (NPD)

http://npd.hgu.mrc.ac.uk/user/admin

Or browse by compartment. Administration of the NPD content is restricted. If you are authorised to access this functionality, please continue. Otherwise you should return to the main NPD now. Note that upon accessing the administration section you will be prompted for a password. Provide it, then please wait, as there may be a slight delay while the administration system collects updates. Proceed to NPD administration. Correspondence: Professor Wendy Bickmore. Medical Research Council Human Genetics Unit.

5

Nuclear Protein Database (NPD)

http://npd.hgu.mrc.ac.uk/user/statistics

Or browse by compartment. Why is the sub-nuclear localisation of a protein important? Can we predict the sub-nuclear localisation of proteins from primary sequence? The following statistical information, derived from the literature and the NPD project, provides an overview of the complexity of various nuclear compartments. Distribution of Nuclear Gene-Traps among Various Sub-Nuclear Compartments. Summarised from: Sutherland et al., (2001). Most common motif amongst gene-traps. DEAD/H box helicase (20%).

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Lanctot Lab - Links

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WDDD - Worm Dev Dyn Database. EPIC - Expression patterns. Biology of the nucleus. Labs (far from exhaustive list). Int Mouse Strain Resources. Euro Cond Mouse Mutagenesis. Eurexpress (Embryo, in situs). NIH Knockout Mouse Project. Int Gene Trap Consortium. Mutant Mouse Resource NIH. Bioinformatics tools and databases. Genome, protein and plasmid databases. DB of Biological databases. InterPro - Protein Domains. Jaspar (TF Binding sites). KEGG-Kyoto Encyc Genes Genomes. PDB - Protein DataBank. Institute o...

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Nuclear Protein Database (NPD)

Or browse by compartment. The Nuclear Protein Database. The Nuclear Protein Database (NPD) is a searchable database of information on proteins that are localised to the nucleus of vertebrate cells. How to use the NPD. An introduction to each of the principal sub-nuclear compartments. What is in the NPD? Where the proteins have been found are reported. Also stored is information on the amino acid sequence, predicted protein size and isoelectric point, as well as any repeats, motifs or domains within t...

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