obiba.org

OBiBa

RPM Fix for Agate and Mica Upgrade. Open Source Software for Epidemiology. Software solutions for data management, analysis and dissemination. Onyx is a comprehensive web application used to manage subject interviews and collect data in clinics or assessment centres. Using Onyx, studies can design and administrate advanced questionnaires and automate data capture directly from electronic medical instruments avoiding error prone manual data acquisition. Analyze with R and DataSHIELD. Mica is a web applica...

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RPM Fix for Agate and Mica Upgrade. Open Source Software for Epidemiology. Software solutions for data management, analysis and dissemination. Onyx is a comprehensive web application used to manage subject interviews and collect data in clinics or assessment centres. Using Onyx, studies can design and administrate advanced questionnaires and automate data capture directly from electronic medical instruments avoiding error prone manual data acquisition. Analyze with R and DataSHIELD. Mica is a web applica...

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OBiBa | obiba.org Reviews

https://obiba.org

RPM Fix for Agate and Mica Upgrade. Open Source Software for Epidemiology. Software solutions for data management, analysis and dissemination. Onyx is a comprehensive web application used to manage subject interviews and collect data in clinics or assessment centres. Using Onyx, studies can design and administrate advanced questionnaires and automate data capture directly from electronic medical instruments avoiding error prone manual data acquisition. Analyze with R and DataSHIELD. Mica is a web applica...

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jira.obiba.org

System Dashboard - OBiBa JIRA

Atlassian JIRA Project Management Software. Powered by a free Atlassian JIRA. Open source license for OBIBA. Try JIRA - bug tracking software.

download.obiba.org

OBiBa Repository

This is the tarball (tar.gz and zip) package repository of Opal. If you need *.tar.gz or *.zip for a specific version, you can obtain them here:.

opal-demo.obiba.org

Opal

onyx-demo.obiba.org

Onyx

OBiBa / Onyx v 1.10.2-b20160930044202.

portal-demo.obiba.org

Welcome to localhost | localhost

Skip to main content. No front page content has been created yet.

wiki.obiba.org

Dashboard - OBiBa Wiki

Skip to header menu. Skip to action menu. Skip to quick search. Skip to Recently Updated. Welcome to the OBiBa Wiki. The OBiBa wiki contains user documentation such as installation, configuration and user guides for our different software applications. It is also used by our developer teams as main communication tools for software analysis and architecture design. Visit the OBiBa web site. To know more about this project. Mica 9.x Documentation. Mica2 0.9.x Documentation [latest].

INTERNAL PAGES

obiba.org

1

Analyze with DataSHIELD

http://www.obiba.org/pages/products/datashield

Some research projects require pooling data from several studies to obtain sample sizes large enough for detecting interactions. Unfortunately, important ethico-legal constraints often prevent or impede the sharing of individual-level data across multiple studies. In collaboration with the DataSHIELD team in University of Bristol, The OBiBa team built the complex software infrastructure required to run securely DataSHIELD analyses on data stored in Opal. With DataSHIELD in Opal.

2

Downloads

http://www.obiba.org/pages/download

OBiBa software are open source and free of charge made available under the GPL3 license. The source code for the OBiBa software is available on Github. Onyx is a Java-based application, so it should run on any platform for which a Java Virtual Machine is provided. Onyx is a web application that requires to be deployed in web server container such as Tomcat. For a quick start, we provide a Onyx Demo. Onyx Demo 1.10.0 (.zip). Once the web archive (.war). Opal is a stand-alone web server application. Detail...

3

Presentations about OBiBa

http://www.obiba.org/pages/presentations

Presentation of the OBiBa softwares stack: history, architecture, user stories. OBiBa Development Tools and Methods. Presentation of the tools and methodology used by the OBiBa team when developping softwares. Presentation of the Onyx architecture and how the source code is organized. The Research Institute of the McGill University Health Centre (RI MUHC). 2155 Guy, 4th Floor, Office 458. Montreal, Quebec, H3H 2R9, Canada.

4

Career Opportunities at OBiBa

http://www.obiba.org/pages/jobs

Career Opportunities at OBiBa. Maelstrom Research is based at the Research Institute of McGill University Health Centre. RI MUHC) specializing in the development of methods and software applications for analyzing and managing large data produced by Canadian and international epidemiological studies. Our front-end and back-end applications use the latest technologies and methodologies and are based on a variety of languages and frameworks:. 2155 Guy, 4th Floor, Office 458. Montreal, Quebec, H3H 2R9, Canada.

5

Publish with Mica

http://www.obiba.org/pages/products/mica

Mica is a powerful software application used to create data web portals for large-scale epidemiological studies or multiple-study consortia. Mica2 is the successor of Mica. Mica helps studies to provide scientifically robust data visibility and web presence without significant information technology effort. Mica provides a structured description of consortia, studies, annotated and searchable data dictionaries, and data access request management. Mica Server Web Application. Studies makes available diffe...

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portal.partnershipfortomorrow.ca

Access Process | CPTP PORTAL

https://portal.partnershipfortomorrow.ca/mica/data_access/home

Skip to main content. Requests for access, as well as requests for further information on the CPTP datasets, are received by the CPTP Access Office. Prior to submitting an Access Application Form, we strongly recommend that you consult the CPTP Policy documents. CPTP Access Application Process. Before initiating a request for access, all researchers must create a CPTP Portal User account. Complete and submit your request. CPTP Policies and Guidelines. Guidelines for Biosample Access. Completed Access App...

portal.partnershipfortomorrow.ca

Access Process | CPTP PORTAL

https://portal.partnershipfortomorrow.ca/mica/data_access

Skip to main content. Requests for access, as well as requests for further information on the CPTP datasets, are received by the CPTP Access Office. Prior to submitting an Access Application Form, we strongly recommend that you consult the CPTP Policy documents. CPTP Access Application Process. Before initiating a request for access, all researchers must create a CPTP Portal User account. Complete and submit your request. CPTP Policies and Guidelines. Guidelines for Biosample Access. Completed Access App...

portal.partnershipfortomorrow.ca

Health and Risk Factor Questionnaire | CPTP PORTAL

https://portal.partnershipfortomorrow.ca/mica/harmonization-dataset/coreqx

Skip to main content. Health and Risk Factor Questionnaire. The Health and Risk Factor Questionnaire Dataset includes the variables collected at baseline by the five population-based cohorts that together compose the Canadian Partnership for Tomorrow (CPT) Project. The current data release includes 307,830 participants. The harmonized dataset includes information on:. Socio-demographics and economic characteristics (ethnic background, education level, employment status, income, .). C/o Canadian Partnersh...

portal.partnershipfortomorrow.ca

Portail de données | Portail PPCED

https://portal.partnershipfortomorrow.ca/fr

Aller au contenu principal. Le Portail du Projet de partenariat canadien Espoir pour demain (PPCED) procure de l’information aux chercheurs pour les aider à identifier les données et les échantillons biologiques d’intérêt afin de répondre à des questions de recherche novatrices de même que sur le processus d’accès aux ressources du PPCED. Pour en savoir plus sur les cinq cohortes régionales du PPCED. Pour en savoir plus sur les ensembles de données du PPCED et l'approche de l'harmonisation des données.

portal.partnershipfortomorrow.ca

Biological Samples | CPTP PORTAL

https://portal.partnershipfortomorrow.ca/samples

Skip to main content. CPTP takes the power of the cohort study a step further with its large biological samples collection. The availability of these biosamples will allow wider and deeper investigations into the causes of cancer and chronic diseases, and may help uncover new means of detection and treatment. Data related to biosamples and access to biosamples will be available later in 2016. Information on these additional releases will be posted on the CPTP Portal. 1 University Avenue, Suite 300.

portal.partnershipfortomorrow.ca

Datasets | CPTP PORTAL

https://portal.partnershipfortomorrow.ca/datasets

Skip to main content. This first release of CPTP harmonized data includes information from Health and Risk Factor Questionnaires collected at baseline (307,830 participants) and comprises a total of 709 variables. Additional data releases will include physical measures data and biosamples data. Health and Risk Factor Questionnaire Data. CoreQx Release 1 questionnaire data collected at baseline (709 variables). Accessible at a later date in 2016. Data related to biosamples collected at baseline.

portal.partnershipfortomorrow.ca

The CPTP Cohort | CPTP PORTAL

https://portal.partnershipfortomorrow.ca/mica/studies

Skip to main content. The Canadian Partnership for Tomorrow Project (CPTP) aims to support leading edge Canadian and international research that investigates environmental, lifestyle and genetic factors related to the development and progression of cancer and chronic diseases. Alberta's Tomorrow Project (Alberta). Alberta’s Tomorrow Project (ATP) is a longitudinal study tracking the health of 55,000 adults aged 35-69 years in this western Canadian province. Read more. Atlantic PATH (Atlantic Region).

brisskit.le.ac.uk

Products & Services | BRISSKit

https://www.brisskit.le.ac.uk/products-services

Skip to main content area. Biomedical Research Infrastructure Software Service kit. BRISSKit offers the ability to upload, manage, combine and collaborate with datasets in-project using a secure infrastructure and then enables analytics and reuse. The use of open source tools for common tasks allows researchers to integrate their own more specialized software and analytics expertise using the platform. Illustration of the relationship between the different aspects of the software stack. Each of the appli...

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ÖBIB - Österreichische Bundes- und Industriebeteiligungen GmbH

Skip navigation and go to content. Beteiligungen vs. ATX. Für die Republik Österreich. Ausbau und Sicherung des. BMF: Martha Oberndorfer wird neue ÖBIB-Geschäftsführerin. Ministerrat bestätigt Vorschlag des Finanzministers Mit dem ÖBIB-Gesetz 2015 wurde die ÖIAG in die Österreichische Bundes- und Industriebeteiligungen GmbH (ÖBIB) umgewandelt. Laut Gesetz obliegt die [mehr]. 20 Jahre Syndikatsvertrag IPIC and ÖIAG. Beteiligungen vs. ATX.

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OBiBa

RPM Fix for Agate and Mica Upgrade. Open Source Software for Epidemiology. Software solutions for data management, analysis and dissemination. Onyx is a comprehensive web application used to manage subject interviews and collect data in clinics or assessment centres. Using Onyx, studies can design and administrate advanced questionnaires and automate data capture directly from electronic medical instruments avoiding error prone manual data acquisition. Analyze with R and DataSHIELD. Mica is a web applica...

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