oct2014.archive.ensembl.org

Ensembl Genome Browser

Or coronary heart disease. The Ensembl project produces genome databases for vertebrates and other eukaryotic species, and makes this information freely available online. For easy access to commonly used genomes, drag from the bottom list to the top one · Save. Chinese softshell turtle (. Lesser hedgehog tenrec (. Middot; Restore default list. Log in to customize this list. Select a species -. View full list of all Archive species. Other species are available in Ensembl. ENCODE data in Ensembl. Ensembl r...

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Ensembl Genome Browser | oct2014.archive.ensembl.org Reviews

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Or coronary heart disease. The Ensembl project produces genome databases for vertebrates and other eukaryotic species, and makes this information freely available online. For easy access to commonly used genomes, drag from the bottom list to the top one · Save. Chinese softshell turtle (. Lesser hedgehog tenrec (. Middot; Restore default list. Log in to customize this list. Select a species -. View full list of all Archive species. Other species are available in Ensembl. ENCODE data in Ensembl. Ensembl r...

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Ensembl Genome Browser | oct2014.archive.ensembl.org Reviews

https://oct2014.archive.ensembl.org

Or coronary heart disease. The Ensembl project produces genome databases for vertebrates and other eukaryotic species, and makes this information freely available online. For easy access to commonly used genomes, drag from the bottom list to the top one · Save. Chinese softshell turtle (. Lesser hedgehog tenrec (. Middot; Restore default list. Log in to customize this list. Select a species -. View full list of all Archive species. Other species are available in Ensembl. ENCODE data in Ensembl. Ensembl r...

INTERNAL PAGES

oct2014.archive.ensembl.org

1

Variant Effect Predictor

http://oct2014.archive.ensembl.org/info/docs/tools/vep

Examples and use cases. The VEP determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions. Simply input the coordinates of your variants and the nucleotide changes to find out the:. Affected by the variants. Of the variants (e.g. upstream of a transcript, in coding sequence, in non-coding RNA, in regulatory regions). Scores for changes to protein sequence. Suits smaller volumes of data.

2

Ensembl genome browser 77: Mus musculus - Description

http://oct2014.archive.ensembl.org/Mus_musculus/Info/Index

What's New in Mouse release 77. Updated mouse otherfeatures db: New CCDS import. Merge species: updated RefSeq gene import. Genome assembly: GRCm38 (GCA 000001635.4). More information and statistics. Convert your data to GRCm38 coordinates. Display your data in Archive. What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs. More about this genebuild. Including RNASeq gene expression models. Download genes, cDNAs, ncRNA, proteins.

3

Ensembl Tools

http://oct2014.archive.ensembl.org/info/docs/tools/index.html

We provide a number of ready-made tools for processing both our data (Biomart and the Virtual machine) and yours. For the latter:. The VEP processes jobs via a ticketing system and can handle medium to large files (up to 50Mb). For other jobs, only small datasets of up to 5Mb can be uploaded and processed online. We aim to extend the ticketing system used for VEP to these tools. For larger datasets we provide an API script that can be downloaded (you will also need to install our Perl API.

4

Ensembl genome browser 77: Danio rerio - Description

http://oct2014.archive.ensembl.org/Danio_rerio/Info/Index

What's New in Zebrafish release 77. Merge species: updated RefSeq gene import. DbSNP SubSNP ids no longer held as synonymns. New interface for alignment export. Genome assembly: Zv9 (GCA 000002035.2). More information and statistics. Display your data in Archive. GRCz10 (Archive release 86). Zv9 (Archive release 79). Zv8 (Archive release 54). What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs. More about this genebuild. What can I find?

5

Public trackhubs

http://oct2014.archive.ensembl.org/info/website/public_trackhubs.html

Coordinate Systems for custom tracks. Compare genes across species. Variants for my gene. ENCODE data in Ensembl. Use my own data. Browse News by Topic. What's New in this release. Archives: Table of assemblies. If you wish to use a hub not on our list, please see our online instructions on how to attach a hub. Please note that tracks are not turned on by default, as there can be thousands in a hub. The link will open the control panel at the correct menu, where you can turn on individual tracks. Predict...

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grch37.ensembl.org

Help - Homo sapiens - GRCh37 Archive browser 86

http://grch37.ensembl.org/Help/ArchiveList

The following archives are available for this page:. Full Feb 2014 archive with BLAST, VEP and BioMart. Ensembl 85: Jul 2016. GRCh38.p7) - patched/updated gene set Jun 2016. Ensembl 84: Mar 2016. Ensembl 83: Dec 2015. GRCh38.p5) - patched/updated gene set Oct 2015. Ensembl 82: Sep 2015. Ensembl 81: Jul 2015. GRCh38.p3) - patched/updated gene set Jun 2015. Ensembl 80: May 2015. GRCh38.p2) - patched/updated gene set Jan 2015. Ensembl 79: Mar 2015. Ensembl 78: Dec 2014. Ensembl 77: Oct 2014.

asia.ensembl.org

Help - Homo sapiens - Ensembl genome browser 85

http://asia.ensembl.org/Help/ArchiveList

The following archives are available for this page:. Full Feb 2014 archive with BLAST, VEP and BioMart. Ensembl 84: Mar 2016. Ensembl 83: Dec 2015. GRCh38.p5) - patched/updated gene set Oct 2015. Ensembl 82: Sep 2015. Ensembl 81: Jul 2015. GRCh38.p3) - patched/updated gene set Jun 2015. Ensembl 80: May 2015. GRCh38.p2) - patched/updated gene set Jan 2015. Ensembl 79: Mar 2015. Ensembl 78: Dec 2014. Ensembl 77: Oct 2014. GRCh38) - patched/updated gene set Aug 2014. Ensembl 76: Aug 2014.

mar2015.archive.ensembl.org

Ensembl genome browser 79: Homo sapiens - - Help

http://mar2015.archive.ensembl.org/Help/ArchiveList

The following archives are available for this page:. Full Feb 2014 archive with BLAST, VEP and BioMart. Ensembl 86: Oct 2016. Ensembl 85: Jul 2016. GRCh38.p7) - patched/updated gene set Jun 2016. Ensembl 84: Mar 2016. Ensembl 83: Dec 2015. GRCh38.p5) - patched/updated gene set Oct 2015. Ensembl 82: Sep 2015. Ensembl 81: Jul 2015. GRCh38.p3) - patched/updated gene set Jun 2015. Ensembl 80: May 2015. GRCh38.p2) - patched/updated gene set Jan 2015. Ensembl 78: Dec 2014. Ensembl 77: Oct 2014.

jul2015.archive.ensembl.org

Ensembl genome browser 81: Homo sapiens - - Help

http://jul2015.archive.ensembl.org/Help/ArchiveList

The following archives are available for this page:. Full Feb 2014 archive with BLAST, VEP and BioMart. Ensembl 86: Oct 2016. Ensembl 85: Jul 2016. GRCh38.p7) - patched/updated gene set Jun 2016. Ensembl 84: Mar 2016. Ensembl 83: Dec 2015. GRCh38.p5) - patched/updated gene set Oct 2015. Ensembl 82: Sep 2015. Ensembl 80: May 2015. GRCh38.p2) - patched/updated gene set Jan 2015. Ensembl 79: Mar 2015. Ensembl 78: Dec 2014. Ensembl 77: Oct 2014. GRCh38) - patched/updated gene set Aug 2014.

ensembl.org

Archives

http://www.ensembl.org/info/website/archives/index.html

Archives: Table of assemblies. List of currently available archives. Full Feb 2014 archive with BLAST, VEP and BioMart. Ensembl 85: Jul 2016. Ensembl 84: Mar 2016. Ensembl 83: Dec 2015. Ensembl 82: Sep 2015. Ensembl 81: Jul 2015. Ensembl 80: May 2015. Ensembl 79: Mar 2015. Ensembl 78: Dec 2014. Ensembl 77: Oct 2014. Ensembl 76: Aug 2014. Ensembl 75: Feb 2014. Ensembl 74: Dec 2013. Ensembl 73: Sep 2013. Ensembl 67: May 2012. Ensembl 54: May 2009. Table of archives showing assemblies present in each one.

gencodegenes.org

GENCODE - Release History

http://www.gencodegenes.org/mouse_releases

How to Access Data. The Mouse GENCODE Gene Set - Release history. Merge between Havana annotation and Ensembl gene set in GRCm38 assembly. M9 (current for GRCm38). Merge between Havana annotation and Ensembl gene set in GRCm38 assembly. Merge between Havana annotation and Ensembl gene set in GRCm38 assembly. Merge between Havana annotation and Ensembl gene set in GRCm38 assembly. Merge between Havana annotation and Ensembl gene set in GRCm38 assembly. Month of the Havana data cutoff.

gencodegenes.org

GENCODE - Release History

http://www.gencodegenes.org/releases

How to Access Data. The Human GENCODE Gene Set - Release history. Re-merge with new Havana annotation, updated Ensembl gene set. 24 (current for GRCh38). Re-merge with new Havana annotation, updated Ensembl gene set. Re-merge with new Havana annotation, updated Ensembl gene set. Re-merge with new Havana annotation, updated Ensembl gene set. Re-merge with new Havana annotation, updated Ensembl gene set. Full new Ensembl gene build and merge with Havana in GRCh38. 19 (current for GRCh37). Automated merge o...

useast.ensembl.org

Help - Homo sapiens - Ensembl genome browser 85

http://useast.ensembl.org/Help/ArchiveList

The following archives are available for this page:. Full Feb 2014 archive with BLAST, VEP and BioMart. Ensembl 84: Mar 2016. Ensembl 83: Dec 2015. GRCh38.p5) - patched/updated gene set Oct 2015. Ensembl 82: Sep 2015. Ensembl 81: Jul 2015. GRCh38.p3) - patched/updated gene set Jun 2015. Ensembl 80: May 2015. GRCh38.p2) - patched/updated gene set Jan 2015. Ensembl 79: Mar 2015. Ensembl 78: Dec 2014. Ensembl 77: Oct 2014. GRCh38) - patched/updated gene set Aug 2014. Ensembl 76: Aug 2014.

ensembl.org

Help - Homo sapiens - Ensembl genome browser 85

http://www.ensembl.org/Help/ArchiveList

The following archives are available for this page:. Full Feb 2014 archive with BLAST, VEP and BioMart. Ensembl 84: Mar 2016. Ensembl 83: Dec 2015. GRCh38.p5) - patched/updated gene set Oct 2015. Ensembl 82: Sep 2015. Ensembl 81: Jul 2015. GRCh38.p3) - patched/updated gene set Jun 2015. Ensembl 80: May 2015. GRCh38.p2) - patched/updated gene set Jan 2015. Ensembl 79: Mar 2015. Ensembl 78: Dec 2014. Ensembl 77: Oct 2014. GRCh38) - patched/updated gene set Aug 2014. Ensembl 76: Aug 2014.

aug2014.archive.ensembl.org

Ensembl genome browser 76: Homo sapiens - - Help

http://aug2014.archive.ensembl.org/Help/ArchiveList

The following archives are available for this page:. Full Feb 2014 archive with BLAST, VEP and BioMart. Archive EnsEMBL 86: Oct 2016. Archive EnsEMBL 85: Jul 2016. GRCh38.p7) - patched/updated gene set Jun 2016. Archive EnsEMBL 84: Mar 2016. Archive EnsEMBL 83: Dec 2015. GRCh38.p5) - patched/updated gene set Oct 2015. Archive EnsEMBL 82: Sep 2015. Archive EnsEMBL 81: Jul 2015. GRCh38.p3) - patched/updated gene set Jun 2015. Archive EnsEMBL 80: May 2015. GRCh38.p2) - patched/updated gene set Jan 2015.

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Ensembl Genome Browser

Or coronary heart disease. The Ensembl project produces genome databases for vertebrates and other eukaryotic species, and makes this information freely available online. For easy access to commonly used genomes, drag from the bottom list to the top one · Save. Chinese softshell turtle (. Lesser hedgehog tenrec (. Middot; Restore default list. Log in to customize this list. Select a species -. View full list of all Archive species. Other species are available in Ensembl. ENCODE data in Ensembl. Ensembl r...

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