Ondex is an open-source software framework for bioinformatics research that includes components for integration, analysis and visualisation of large biological datasets. Data is modelled as a graph of entities and relations
http://www.ondex.org/
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Ondex - data integration and biological network analysis | ondex.org Reviews
https://ondex.org
Ondex is an open-source software framework for bioinformatics research that includes components for integration, analysis and visualisation of large biological datasets. Data is modelled as a graph of entities and relations
ondex.org
Ondex - data integration and visualisation
http://www.ondex.org/news.shtml
Documentation and sample graphs. Paper published - Interactive exploration of integrated biological datasets using context-sensitive workflows (20/02/2014). Fabian Horn, Martin Rittweger, Jan Taubert, Artem Lysenko, Christopher Rawlings and Reinhard Guthke(2014). Interactive exploration of integrated biological datasets using context-sensitive workflows Frontiers in Genetics (2014) vol 5: doi: 10.3389/fgene.2014.00021. Ondex 2013 release is now available (31/01/2014). Context-sensitive menu powered by On...
Ondex - data integration and visualisation
http://www.ondex.org/features.shtml
Documentation and sample graphs. Java J2SE 6.0. Oracle Berkeley DB Java Edition. Apache CXF SOAP framework. Apache Lucene text search engine. Ondex plugins and workflows. Import databases and experimental datasets. Export as an Ondex graph. Export as other formats (e.g. tab-delimited file). Import an Ondex graph or use the user interface to compose a workflow and run your data integration. Visualise the integrated data. Use available layouts, filters and annotators to analyse the data.
Ondex - data integration and visualisation
http://www.ondex.org/developer_links_index.shtml
Documentation and sample graphs. Report problems and request features using our Jira Issue Tracker service. Ondex site at Sourceforge hosts our SVN repository, previous releases and sample graphs. Ondex uses Maven build and dependency management system. All dependencies needed to build Ondex are made available here. Link to SVN repository to checkout code. Direct public links to the nightly builds. Last updated 2 April 2014.
Ondex - data integration and visualisation
http://www.ondex.org/formats.shtml
Documentation and sample graphs. Last updated 2 April 2014.
Ondex - data integration and visualisation
http://www.ondex.org/people.shtml
Documentation and sample graphs. Artem Lysenko, Keywan Hassani-Pak, Maria Esch, Martin Castellote. Ondex is an open source software and we are always open to starting new collaboration. If you need help with using Ondex for your application case feel free to contact us at contact@ondex.org. Links for current developers:. Last updated 2 April 2014.
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SegMine methodology
http://segmine.ijs.si/manual
Currently, we provide descrtiptions of analytical features of SegMine (i.e., SegMine workflow components) and video tutorials. Together with use case documentation and installation instruction we hope this is enough to get started with SegMine. Add logFC to graph. Microarray parser widget performs three functions:. Parses the input data, recognizes values in rows and columns, treats missing values as specified and performs syntax check,. MicroarrayTable [type: orange.ExampleTable]. Cutoff widget removes ...
SegMine methodology
http://segmine.ijs.si/publications
Here is a list of publications which are related to the SegMine methodology, its components (the SEGS algorithm, the Biomine system, etc.). and applications. Mozetič, I., Lavrač, N., Podpečan, V., Kralj Novak, P., Motaln, H., Petek, M., Gruden, K., Toivonen, H., Kulovesi, K. Semantic Subgroup Discovery and Cross-Context Linking for Microarray Data Analysis, In Bisociative Knowledge Discovery. MR Berthold, Ed.), Springer (LNAI 7250), pp. 379-389, 2012. [ pdf. 13, 119 (2012). [ pdf. Mozetič, I., Lavrač...
SegMine methodology
http://segmine.ijs.si/download
Download and install SegMine. SegMine is available under GPL licence (the same as Orange and Orange4WS). It is developed on Linux, and works on Linux, Windows, and Mac (not yet tested on Mac). SegMine is implemented as a collection of widgets for Orange4WS, so it requires a working Orange4WS. Environment. We provide binary installers for Orange4WS, SegMine and ZSI (ZSI is required for Orange4WS). Full Orange installer is also provided. Windows systems (XP, Vista, 7):. Orange installation from source.
SegMine methodology
http://orange4ws.ijs.si/use_cases
Here is an interview about the SegMine methodology with dr. Helena Motaln. From Department of Genetic Toxicology and Cancer Biology. National Institute of Biology. Ljubljana, Slovenia. She shares her opinion on using SegMine in expert data analysis and comments its abilities. We present an example of analysis performed using SegMine. Two datasets were included: the acute lymphoblastic leukemia (ALL) dataset ( Chiaretti et al., 2004. And Schallmoser et al., 2010. Rule discovery using the SEGS algorithm.
SegMine methodology
http://orange4ws.ijs.si/publications
Here is a list of publications which are related to the SegMine methodology, its components (the SEGS algorithm, the Biomine system, etc.). and applications. Mozetič, I., Lavrač, N., Podpečan, V., Kralj Novak, P., Motaln, H., Petek, M., Gruden, K., Toivonen, H., Kulovesi, K. Semantic Subgroup Discovery and Cross-Context Linking for Microarray Data Analysis, In Bisociative Knowledge Discovery. MR Berthold, Ed.), Springer (LNAI 7250), pp. 379-389, 2012. [ pdf. 13, 119 (2012). [ pdf. Mozetič, I., Lavrač...
SegMine methodology
http://orange4ws.ijs.si/download
Download and install SegMine. SegMine is available under GPL licence (the same as Orange and Orange4WS). It is developed on Linux, and works on Linux, Windows, and Mac (not yet tested on Mac). SegMine is implemented as a collection of widgets for Orange4WS, so it requires a working Orange4WS. Environment. We provide binary installers for Orange4WS, SegMine and ZSI (ZSI is required for Orange4WS). Full Orange installer is also provided. Windows systems (XP, Vista, 7):. Orange installation from source.
SegMine methodology
http://orange4ws.ijs.si/easy_start
Get started with SegMine. For an easy start see below the demo videos. The first video demostrates an analytical workflow which consists of generating the semantic rules with SEGS which followed by visualisation with BioMine. The second video demonstrates a similar analytical workflow which also allows for the creation of novel research hypotheses by using BioMine's link discovery engine on selected gene sets. SegMine for metabolomics is under development. Version 0.7.2 is out! Of the Academy of Finland.
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Dřevocentrum ONDex s.r.o
Dřevocentrum Petřvald u Karviné. DŘEVOPRODEJ ONDex s.r.o. - dřevocentrum Petřvald a dřevocentrum Olomouc. Firma ONDex s.r.o. byla založena v r. 2002, činnost společnosti se však datuje od roku 1993, kdy německá mateřská firma H.A.P. Handel GmbH vybudovala síť profesionálních dodavatelů v České republice, Slovensku, Skandinávii, Rusku a Indonésii. Obchodní strategie firmy ONDex s.r.o. se zaměřuje především na dodávky dřevomateriálu. Tým zaměstnanců firmy se těší. OSB DESKY KRONOPOL A KRONOSPAN.
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指引网_Ondex.net - 程序员学习基地-下载中心
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Ondex - data integration and biological network analysis
Documentation and sample graphs. Gathering and managing data from diverse and heterogeneous datasets is central to many systems approaches to biology. Systems biologists need to easily identify and gather the information they require and then integrate and analysis the experimental and reference data sets which can come from myriad databases with a wide variety of formats and access methods. The Ondex data integration platform enables data from diverse biological data sets. Links to more information:.
ONDEX
ONDEX.RU
ONDEX - прозрачность и надежность. Профилированный прозрачный пластик Ондекс для навесов, теплиц, оранжерей, крытых парковок, ограждений. Особая технология упрочнения пластика Ондекс делает его устойчивым к ударным нагрузкам, суровым погодным условиям, химическому воздействию, УФ-излучению. Простота монтажа, обработки, большое разнообразие цвета, форм профилей, возможность упругого изгиба, ударопрочность, градостойкость делает профилированный пластик Ондекс удачным выбором для решения задач промы...
Bio Online - Ondex
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