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Holder Lab Web page | phylo.bio.ku.edu

Holder Lab Web page. The Holder lab works on the statistical and computational aspects of phylogenetic and phylogeographic inference. Open Tree of Life. Likelihood Methods for Fossil Phylogenetics. Assistant professor at Iowa State University. A software developer in Lawrence, KS. Currently working as a researcher at the University of Minnesota. Dr Emily Jane McTavish. Currently an assistant professor at Univ. California at Merced. A post-doc at the Roslin Institute at University of Edinburgh.

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Holder Lab Web page | phylo.bio.ku.edu | phylo.bio.ku.edu Reviews
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Holder Lab Web page. The Holder lab works on the statistical and computational aspects of phylogenetic and phylogeographic inference. Open Tree of Life. Likelihood Methods for Fossil Phylogenetics. Assistant professor at Iowa State University. A software developer in Lawrence, KS. Currently working as a researcher at the University of Minnesota. Dr Emily Jane McTavish. Currently an assistant professor at Univ. California at Merced. A post-doc at the Roslin Institute at University of Edinburgh.
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1 phylobio ku edu
2 courses
3 software
4 lab members
5 dr ben redelings
6 dr jeet sukumaran
7 dr walker pett
8 dr mark holder
9 projects
10 trilogenetics
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phylobio ku edu,courses,software,lab members,dr ben redelings,dr jeet sukumaran,dr walker pett,dr mark holder,projects,trilogenetics,former lab members,dr tracy heath,liam heins,jordan koch,dr peter midford,dr daniel money,dr jamie oaks,dr april wright
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Holder Lab Web page | phylo.bio.ku.edu | phylo.bio.ku.edu Reviews

https://phylo.bio.ku.edu

Holder Lab Web page. The Holder lab works on the statistical and computational aspects of phylogenetic and phylogeographic inference. Open Tree of Life. Likelihood Methods for Fossil Phylogenetics. Assistant professor at Iowa State University. A software developer in Lawrence, KS. Currently working as a researcher at the University of Minnesota. Dr Emily Jane McTavish. Currently an assistant professor at Univ. California at Merced. A post-doc at the Roslin Institute at University of Edinburgh.

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phylo.bio.ku.edu phylo.bio.ku.edu
1

Holder Lab Web page | phylo.bio.ku.edu

http://phylo.bio.ku.edu/home

Holder Lab Web page. The Holder lab works on the statistical and computational aspects of phylogenetic and phylogeographic inference. Open Tree of Life. Likelihood Methods for Fossil Phylogenetics. Currently and Asst. Prof. at Iowa State University. Currently work at the AMNH through a Helen Fellowship. Dr Emily Jane McTavish. Currently an assistant professor at Univ. California at Merced. Currently a post-doc at Dalhousie University. Currently a postdoctoral researcher at Iowa State University.

2

Courses | phylo.bio.ku.edu

http://phylo.bio.ku.edu/courses

BIOL 428 Introduction to Systematics. BIOL 701 Likelihood Methods in Biology. BIOL 570: Introduction to Biostatistics (co-taught with Dr. Helen Alexander). BIOL 701/GEOL 791: Systematics and Macroevolution (co-taught with Dr. Wm. Leo Smith, Dr. Bruce Lieberman, Dr. Kirsten Jensen, and Dr. Michael Engel). The schedule for the Spring 2014 Systematics Discussion group is at http:/ phylo.bio.ku.edu/systematics/schedule.html. BIOL 428 Introduction to Systematics. BIOL 701 Likelihood Methods in Biology: See th...

3

Software | phylo.bio.ku.edu

http://phylo.bio.ku.edu/content/borice

The lab is involved is several software development projects:. Is a geographically explicit simulator of host-parasite coevolution being developed in collaboration with Janine Caira. At the University of Texas; public version by Yu and Holder). See the README.txt. Sukumaran and Holder) - a Python library for phylogenetic scripting and pipelining, with support for reading/writing, simulation, processing, manipulation, and statistics of phylogenetic trees and characters in various formats.

4

Jordan Koch | phylo.bio.ku.edu

http://phylo.bio.ku.edu/content/jordan-koch

This semester I hope to apply our algorithms to a variety of datasets, and to calculate goodness-of-fit statistics from our algorithms' computed probabilities in order to have a more rigorous test of model adequacy. Department of Ecology and Evolutionary Biology. Haworth Hall, 900 Sunnyside Avenue. Lawrence, KS 66045. Is part of the Department of Ecology and Evolutionary Biology.

5

Phylo teaching widgets

http://phylo.bio.ku.edu/mephytis/index.html

Optimizing branch lengths using ML. Comparing trees using ML requires branch length optimization. Parsimony informative-pattern frequency demo. Bootstrapping in parsimony-informative pattern frequency space demo. Value depends on the per-site likelihood difference distribution. Back to the demo table of contents. Source code at https:/ github.com/mtholder/mephytis. Thanks to the U.S. National Science Foundation. And the Heidelberg Institute for Theoretical Studies.

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Holder Lab Web page | phylo.bio.ku.edu

Holder Lab Web page. The Holder lab works on the statistical and computational aspects of phylogenetic and phylogeographic inference. Open Tree of Life. Likelihood Methods for Fossil Phylogenetics. Assistant professor at Iowa State University. A software developer in Lawrence, KS. Currently working as a researcher at the University of Minnesota. Dr Emily Jane McTavish. Currently an assistant professor at Univ. California at Merced. A post-doc at the Roslin Institute at University of Edinburgh.

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