pocketquery.csb.pitt.edu

PocketQuery

PocketQuery is currently down while a corrupted database gets repaired. Please check back later. PPI Inhibitor Starting Points from PPI Structure. For best results, please use Firefox. If you have a modern browser, Java is not. The top ranked cluster in this example screen. Of the p53/MDM2 interface, an anti-cancer target, is a proven starting point for drug discovery. PocketQuery is a web service for interactively exploring not only hot spot and anchor residues, but hot. From the Camacho Lab.

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PocketQuery | pocketquery.csb.pitt.edu Reviews

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PocketQuery is currently down while a corrupted database gets repaired. Please check back later. PPI Inhibitor Starting Points from PPI Structure. For best results, please use Firefox. If you have a modern browser, Java is not. The top ranked cluster in this example screen. Of the p53/MDM2 interface, an anti-cancer target, is a proven starting point for drug discovery. PocketQuery is a web service for interactively exploring not only hot spot and anchor residues, but hot. From the Camacho Lab.

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PocketQuery | pocketquery.csb.pitt.edu Reviews

https://pocketquery.csb.pitt.edu

PocketQuery is currently down while a corrupted database gets repaired. Please check back later. PPI Inhibitor Starting Points from PPI Structure. For best results, please use Firefox. If you have a modern browser, Java is not. The top ranked cluster in this example screen. Of the p53/MDM2 interface, an anti-cancer target, is a proven starting point for drug discovery. PocketQuery is a web service for interactively exploring not only hot spot and anchor residues, but hot. From the Camacho Lab.

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pocketquery.csb.pitt.edu

1

PocketQuery

http://pocketquery.csb.pitt.edu/pocket.html?JMOL=1

Perform a pharmacophore search over compounds from the ZINC database. Perform a pharmacophore search over a library of more than 15 million novel, chemically accessible, compounds that are biased towards specified amino acids (currently TRP, PHE, TYR, LEU, and VAL). Save the cluster residues as a PDB file.

2

PocketQuery Help

http://pocketquery.csb.pitt.edu/help.html

PocketQuery is a web interface for exploring the the properties of protein-protein interaction (PPI) interfaces with a focus on the discovery of promising starting points for small-molecule design. PocketQuery is regularly updated with PPI structures from the PDB. All protein-containing complexes are analyzed using the first biological assembly. If a biological assembly is not available, the first model of the asymmetric unit is used. Additionally, users may upload. Their own PPI structures. Full text se...

3

PocketQuery Upload

http://pocketquery.csb.pitt.edu/upload.html

Here you can upload your own protein-protein interaction structure for analysis. The uploaded file must be in PDB format, and all the models/chains will be merged into a single structure (i.e., if uploading the result of an NMR experiment, be sure there is only a single model in the file). Chains must have a valid, non-blank, identifier.

4

PocketQuery

http://pocketquery.csb.pitt.edu/pocket.html

Perform a pharmacophore search over compounds from the ZINC database. Perform a pharmacophore search over a library of more than 15 million novel, chemically accessible, compounds that are biased towards specified amino acids (currently TRP, PHE, TYR, LEU, and VAL). Save the cluster residues as a PDB file.

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smoothdock.ccbb.pitt.edu

Publications — SmoothDock

http://smoothdock.ccbb.pitt.edu/publications

Only in current section. T Travers, H. Shao, B. A. Joughin, D. A. Lauffenburger, A. Wells, C. J. Camacho, Tandem phosphorylation within an intrinsically disordered region regulates ACTN4 function. Shao H, Travers T, Camacho CJ, Wells A. The carboxyl tail of alpha-actinin-4. Regulates its susceptibility to m-calpain and thus functions in cell migration. And spreading. Int J Biochem Cell Biol. 2013 Jun;45(6):1051-63. Epub 2013 Mar 1. (PMID: 23466492. 5;104(3):705-15. (PMID: 23442921. N, Matsuzaki Y, Ishida...

bioinformatictools.blogspot.com

Bioinformatics Tools: In-silico Binding Site Prediction in Proteins

http://bioinformatictools.blogspot.com/2012/02/in-silico-binding-site-prediction-in.html

Bioinformatics has evolved as a great tool for molecular biologists. There are various tools available for helping in reducing the time required to analyze biological materials be it DNA, RNA, Proteins etc. I wish to list here few of the commonly used tools. Please send me suggestions to improve the content. If you like or dislike something, let me know, your inputs matters. contact me: drsanjivk[at]gmail[dot]com. Sunday, February 26, 2012. In-silico Binding Site Prediction in Proteins. Is a meta server ...

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pocketquery.csb.pitt.edu

PocketQuery

PocketQuery is currently down while a corrupted database gets repaired. Please check back later. PPI Inhibitor Starting Points from PPI Structure. For best results, please use Firefox. If you have a modern browser, Java is not. The top ranked cluster in this example screen. Of the p53/MDM2 interface, an anti-cancer target, is a proven starting point for drug discovery. PocketQuery is a web service for interactively exploring not only hot spot and anchor residues, but hot. From the Camacho Lab.

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