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Welcome to v3 PopGenIE: The Populus Genome Integrative Explorer | popgenie.org

Populus tremula X Populus alba. Populus tremula X Populus tremuloides. Welcome to v3 PopGenIE: The Populus Genome Integrative Explorer. Of PopGenIE basic features. There are currently five available workflows. Explore conservation using genefamily analysis. Explore conservation using gene expression analysis. Results are generated based on previous selections. All our tools are under MIT License. View active genelist (.

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Welcome to v3 PopGenIE: The Populus Genome Integrative Explorer | popgenie.org | popgenie.org Reviews

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Populus tremula X Populus alba. Populus tremula X Populus tremuloides. Welcome to v3 PopGenIE: The Populus Genome Integrative Explorer. Of PopGenIE basic features. There are currently five available workflows. Explore conservation using genefamily analysis. Explore conservation using gene expression analysis. Results are generated based on previous selections. All our tools are under MIT License. View active genelist (.

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Welcome to v3 PopGenIE: The Populus Genome Integrative Explorer | popgenie.org | popgenie.org Reviews

https://popgenie.org

Populus tremula X Populus alba. Populus tremula X Populus tremuloides. Welcome to v3 PopGenIE: The Populus Genome Integrative Explorer. Of PopGenIE basic features. There are currently five available workflows. Explore conservation using genefamily analysis. Explore conservation using gene expression analysis. Results are generated based on previous selections. All our tools are under MIT License. View active genelist (.

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Biblio | popgenie.org

http://popgenie.org/biblio

Populus tremula X Populus alba. Populus tremula X Populus tremuloides. Henry, I. M. Zinkgraf M. S. Groover A. T. 2015) A System for Dosage-Based Functional Genomics in Poplar. The Plant cell. 27. 2015) IGMAP: An Interactive Mapping and Clustering Platform for Plants. Molecular plant. 8. Lin Y - C. 2015) The Plant Genome Integrative Explorer Resource: PlantGenIE.org. Park J. - I. Jung H. - J. Ahmed N. U. Chung M. - Y. BMC genomics. 16. Rinne, P. L. H. Paul L. K. Van der Schoot C. Meyers B. C. Lin Y - C.

2

Random List | popgenie.org

http://popgenie.org/random-list

Populus tremula X Populus alba. Populus tremula X Populus tremuloides. Create a list of random gene models:(up to 999 gene models). Select random list form:. All our tools are under MIT License. View active genelist (.

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Partners | popgenie.org

http://popgenie.org/partners

Populus tremula X Populus alba. Populus tremula X Populus tremuloides. All our tools are under MIT License. View active genelist (.

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Citation, Terms and Conditions | popgenie.org

http://popgenie.org/citation

Populus tremula X Populus alba. Populus tremula X Populus tremuloides. Citation, Terms and Conditions. By accessing PopGenIE, you agree to the following user agreement:. PopGenIE is protected according to the stipulations of Directive 96/9/EC of the European Parliament and of the Council of 11 March 1996 on the legal protection of databases. Upon publication of gene expression data, authors should acknowledge the relevant publications relating to the data used, as indicated on the PopGenIE webpages.

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BLAST/BLAT | popgenie.org

http://popgenie.org/blast

Populus tremula X Populus alba. Populus tremula X Populus tremuloides. BLASTN - nucleotide query to nucleotide db. BLASTP - protein query to protein db. TBLASTN - protein query to translated (6 frames) nt db. TBLASTX - transl. (6 frames) nucl. query to transl (6) nt db. BLASTX - translated (6 frames) nucl. query to protein db. Populus trichocarpa(v3.0) Hardmasked. Populus trichocarpa(v3.0) Softmasked. Populus tremuloides x Populus tremula-T89*. Populus tremuloides x Populus tremula-T89(v1.0)*.

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The University of British Columbia. UBC - A Place of Mind. The University of British Columbia. WORKING ON WALLS - an NSERC CREATE Training Program. WoW- Gordon Research Seminar. WoW – UPSC 2013, Umeå, Sweden. WoW 2011 – UBC, Vancouver. European Arabidopsis Stock Centre. Seed and information resources. ISI Web of Knowledge. PopGenie – Integrative populus genome explorer. V3 PopGenIE: The Populus Genome Integrative Explorer. SUBA, Arabidopsis subcellular database. SUBA provides a powerful tool to investiga...

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Filter | The UEA small RNA Workbench

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The UEA small RNA Workbench. How To Cite Us. Quality Checking and Normalisation. Quality Checking, Normalisation and Differential Expression. Quality Check, Normalisation and Differential Expression Tutorial. Adapter Removal Tutorial (updated). Sequence Alignment Tutorial (updated). TA-SI Prediction Tutorial (updated). RNA Annotation Tutorial (updated). Using data sets in multiple tools. The History Browser. What can the UEA sRNA Workbench do for you? Available from Version: 1.0. The user also has the op...

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SiLoCo | The UEA small RNA Workbench

http://srna-workbench.cmp.uea.ac.uk/tools/analysis-tools/siloco

The UEA small RNA Workbench. How To Cite Us. Quality Checking and Normalisation. Quality Checking, Normalisation and Differential Expression. Quality Check, Normalisation and Differential Expression Tutorial. Adapter Removal Tutorial (updated). Sequence Alignment Tutorial (updated). TA-SI Prediction Tutorial (updated). RNA Annotation Tutorial (updated). Using data sets in multiple tools. The History Browser. What can the UEA sRNA Workbench do for you? Available from Version: 2.0. An example of the result...

upsc.se

Populus Genome Program - Umeå Plant Science Centre

https://www.upsc.se/resources/populus-genome-program.html

Bookings, Info etc. Trees and Crops for the Future. Poplar in vito Rooms. Growth Rooms Floor 5. Engineering Programme in Bioresource Technology. The Populus Genome Program. The Populus Genome Program is a part of SCTFG (Swedish Center for Tree Functional Genomics) and is the most comprehensive tree genome program in the world. Discontinued - use popgenie. Cloning of full length poplar transcription factor cDNAs and expression in. PopGenIE facilitates the exploration of genes and gene function in.

upsc.se

Nathaniel Street - A Systems Genetics Approach to Understanding Natural Variation - Umeå Plant Science Centre

http://www.upsc.se/nathaniel_street

Bookings, Info etc. Trees and Crops for the Future. Poplar in vito Rooms. Growth Rooms Floor 5. Engineering Programme in Bioresource Technology. Nathaniel Street - A Systems Genetics Approach to Understanding Natural Variation. Nathaniel Street - A Systems Genetics Approach to Understanding Natural Variation. Group Members and Contact Information. To support genome-wide association mapping and expres- sion QTL mapping we have produced de novo assemblies of the aspen and spruce genomes,including de novo t...

plantgdb.org

Populus trichocarpa Genome DB

http://www.plantgdb.org/PtGDB

That username or email is already registered, or you have forgotten to enter a required field. Please try again. This username is invalid or already in use! This password is invalid! This email address is invalid or already in use! Please supply an account name. Authenticating Login. Please wait. Stay logged in until I:. Am inactive for a day. Forgot username / password. AtGDB - Arabidopsis thaliana. BrGDB - Brassica rapa. CpGDB - Carica papaya. CsGDB - Cucumis sativus. GhGDB - Gossypium hirsutum. Annota...

biomaj.genouest.org

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BioMAJ (BIOlogie Mise A Jour) is a workflow engine dedicated to data synchronization and processing. The software automates the update cycle and the supervision of the locally mirrored databank repository. The software is free and released under AGPL v3 based licence. Multiple remote protocols (ftp, sftp, http, local copy, .). Data transfers integrity check. Release versioning using a incremental approach. Data extraction (gzip, tar, bzip). Data tree directory normalisation. Pre &Post processing :.

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The University of British Columbia. UBC - A Place of Mind. The University of British Columbia. WORKING ON WALLS - an NSERC CREATE Training Program. WoW- Gordon Research Seminar. WoW – UPSC 2013, Umeå, Sweden. WoW 2011 – UBC, Vancouver. European Arabidopsis Stock Centre. Seed and information resources. ISI Web of Knowledge. PopGenie – Integrative populus genome explorer. V3 PopGenIE: The Populus Genome Integrative Explorer. SUBA, Arabidopsis subcellular database. SUBA provides a powerful tool to investiga...

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Databases & Software - Umeå Plant Science Centre

https://www.upsc.se/resources/databases-a-software.html

Bookings, Info etc. Trees and Crops for the Future. Poplar in vito Rooms. Growth Rooms Floor 5. Engineering Programme in Bioresource Technology. Discontinued - use popgenie. Cloning of full length poplar transcription factor cDNAs and expression in. PopGenIE facilitates the exploration of genes and gene function in. Facilitates the exploration of genes and gene function in Norway spruce. Softwares developed at UPSC. Spot quality assessment for the two-channel microarray platform. UPSC Monday Seminar 2016.

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Welcome to v3 PopGenIE: The Populus Genome Integrative Explorer | popgenie.org

Populus tremula X Populus alba. Populus tremula X Populus tremuloides. Welcome to v3 PopGenIE: The Populus Genome Integrative Explorer. Of PopGenIE basic features. There are currently five available workflows. Explore conservation using genefamily analysis. Explore conservation using gene expression analysis. Results are generated based on previous selections. All our tools are under MIT License. View active genelist (.

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