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proteomics.gersteinlab.org

PARE: Protein-Abundance-vs-MRNA

EZ Yu, AE Burba, M Gerstein (2007) BMC Bioinformatics. 8: 309. [paper]. Required if selecting datasets from menus in (2) and (3) below]. Please see external mRNA expression and protein abundance databases. To retrieve additional datasets for analysis. Perform correlation for selected categories (subsets for selection appear on next page). Pick a MIPS complex of proteins for the analysis. Pick a GO biological process subset. Pick a GO molecular function subset. Pick a GO cellular component subset.

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PARE: Protein-Abundance-vs-MRNA | proteomics.gersteinlab.org Reviews
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EZ Yu, AE Burba, M Gerstein (2007) BMC Bioinformatics. 8: 309. [paper]. Required if selecting datasets from menus in (2) and (3) below]. Please see external mRNA expression and protein abundance databases. To retrieve additional datasets for analysis. Perform correlation for selected categories (subsets for selection appear on next page). Pick a MIPS complex of proteins for the analysis. Pick a GO biological process subset. Pick a GO molecular function subset. Pick a GO cellular component subset.
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PARE: Protein-Abundance-vs-MRNA | proteomics.gersteinlab.org Reviews

https://proteomics.gersteinlab.org

EZ Yu, AE Burba, M Gerstein (2007) BMC Bioinformatics. 8: 309. [paper]. Required if selecting datasets from menus in (2) and (3) below]. Please see external mRNA expression and protein abundance databases. To retrieve additional datasets for analysis. Perform correlation for selected categories (subsets for selection appear on next page). Pick a MIPS complex of proteins for the analysis. Pick a GO biological process subset. Pick a GO molecular function subset. Pick a GO cellular component subset.

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proteomics.gersteinlab.org proteomics.gersteinlab.org
1

Protein sequence variation

http://proteomics.gersteinlab.org/seqvar

Generate a listing of protein sequence variants from Uniprot record(s). Records for different proteins must be separated by '/ ' (the standard Uniprot end-of-sequence notation), as shown in the example input file. Upload Uniprot file example file. Created by Anne Counterman Burba. For comments please email to helix [at] bioinfo.mbb.yale.edu. Last modified: October 2006.

2

Proteomics.gersteinlab.org: citations

http://proteomics.gersteinlab.org/citations.html

Greenbaum, D., Colangelo, C., Williams, K. and Gerstein, M. (2003) Comparing protein abundance and mRNA expression levels on a genomic scale. Genome Biology, 4, 117. Holstege, F.C. and Jennings, E.G., et al. (1998) Dissecting the regulatory circuitry of a eukaryotic genome. Cell, 95, 717-728. Jelinsky, S.A. and Samson, L.D. (1999) Global response of Saccharomyces cerevisiae to an alkylating agent. PNAS USA, 96, 1486-1491. Griffin TJ, Gygi SP, Ideker T, Rist B, Eng J, Hood L, Aebersold R. (2002) Compl...

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PARE: Protein-Abundance-vs-MRNA

EZ Yu, AE Burba, M Gerstein (2007) BMC Bioinformatics. 8: 309. [paper]. Required if selecting datasets from menus in (2) and (3) below]. Please see external mRNA expression and protein abundance databases. To retrieve additional datasets for analysis. Perform correlation for selected categories (subsets for selection appear on next page). Pick a MIPS complex of proteins for the analysis. Pick a GO biological process subset. Pick a GO molecular function subset. Pick a GO cellular component subset.

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