Now it is a Beta service, which means there are still known bugs and incomplete features, and the service is subject to unexpected downtime. The official service will soon begin. Presented by DBCLS (Database Center for Life Science).
http://pubannotation.dbcls.jp/
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PubAnnotation | pubannotation.dbcls.jp Reviews
https://pubannotation.dbcls.jp
Now it is a Beta service, which means there are still known bugs and incomplete features, and the service is subject to unexpected downtime. The official service will soon begin. Presented by DBCLS (Database Center for Life Science).
pubannotation.dbcls.jp
PubAnnotation
http://pubannotation.dbcls.jp/projects/NEUROSES
This corpus is composed of PubMed articles containing cognitive enhancers and anti-depressants drug mentions. The selected sentences are automatically annotated using the NCBO Annotator with the Chemical Entities of Biological Interest (CHEBI) and Phenotypic Quality Ontology (PATO) ontologies, we also produced annotations using PhenoMiner ontology via a dictionary-based tagger. This work is licensed under a Creative Commons Attribution 4.0 International License. Annotations (2,151,082).
PubAnnotation
http://pubannotation.dbcls.jp/projects
Mariana Neves, Alexander Damaschun, Andreas Kurtz, Ulf Leser. The 295 BEL statements for sample set used for the 2015 BioCreative challenge. A small corpus for the evaluation of dictionaries containing chemical entities. br Publication: http:/ www.scai.fraunhofer.de/fileadmin/images/bio/data mining/paper/kolarik2008.pdf. Id=101371/journal.pone.0065390 target=blank doi:10.1371/journal.pone.0065390 /a. Chih-Hsuan Wei , Bethany R. Harris , Hung-Yu Kao and Zhiyong Lu. The NCBI disease corpus is fully annotat...
PubAnnotation
http://pubannotation.dbcls.jp/projects/bionlp-st-ge-2016-spacy-parsed
Dependency parses produced by spaCy parser, and part-of-speech tags produced by Stanford tagger (with the wsj-0-18-left3words-nodistsim model). The exact procedure is described here. Data set contains the 34 full paper articles used in the BioNLP 2016 GE task. This work is licensed under a Creative Commons Attribution 4.0 International License. Not prepared yet for this project. The official service will soon begin. Presented by DBCLS (Database Center for Life Science).
PubAnnotation
http://pubannotation.dbcls.jp/projects/craft
Test bed for PubAnnotation query development. Creative Commons Attribution 3.0 Unported License. Not prepared yet for this project. Now it is a Beta service, which means there are still known bugs and incomplete features, and the service is subject to unexpected downtime. The official service will soon begin. Presented by DBCLS (Database Center for Life Science).
PubAnnotation
http://pubannotation.dbcls.jp/docs/sourcedb/PubMed
CFTR expression does not influence glycosylation of an epitope-tagged MUC1 mucin in colon carcinoma. Tissue specific expression and chromosomal mapping of a human UDP-N-acetylglucosamine: alpha1,3-d-ma. MUC1 in human and murine mammary carcinoma cells decreases the expression of core 2 β1,6-N-acetylglu. Subunit-specific sulphation of oligosaccharides relating to charge-heterogeneity in porcine lutrophi. Control of metastasis by Asn-linked, beta1-6 branched oligosaccharides in mouse mammary cancer cells.
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Projects - BioNLP@DBCLS
http://bionlp.dbcls.jp/projects
To share the tasks and solutions for bio-textmining. The 2013 version of the Genia event extraction task integrates the coreference resolution task in it, while refining previous subtasks. Genia event extraction (GE) task, 2016 ¶. From text to Knowledge base: an application case to the domain of NFkB". Jin-Dong Kim, Database Center for Life Science (DBCLS). Yue Wang, Database Center for Life Science (DBCLS). Natural language query processing for SPARQL generation. Named Entity Recognition (NER). Is achie...
Index - TextAE - BioNLP@DBCLS
http://bionlp.dbcls.jp/projects/textae/wiki
TextAE (Text Annotation Editor). Is a web-based annotation editor to texts,. Works as the default editor of PubAnnotation. A sharable storage of annotation.
Overview - TextAE - BioNLP@DBCLS
http://bionlp.dbcls.jp/projects/textae
TextAE (Text Annotation Editor). Is a web-based annotation editor to texts,. Works as the default editor of PubAnnotation. A sharable storage of annotation.
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PubAnnotation
Now it is a Beta service, which means there are still known bugs and incomplete features, and the service is subject to unexpected downtime. The official service will soon begin. Presented by DBCLS (Database Center for Life Science).
PubAnnotation
Share your annotation in alignment with others! Anyone can register his/her text annotations in PubAnnotation. The contributors will retain their full right over their annotation data. PubAnnotation will only help data holders share their data with others. All the annotation data on PubAnnotation are accessable through REST API. It means, you don't need to download whole data sets any more, as your program can directly access the data whenever necessary. The annotations below are rendered by TextAE.
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