pycogent.wordpress.com
PyCogent 1.4.1 released | PyCogent
https://pycogent.wordpress.com/2010/04/10/pycogent-1-4-1-released
News and Announcements regarding the Python Bioinformatics Toolkit, PyCogent. PyCogent 1.4.1 released. The PyCogent development team is proud to announce the release of PyCogent 1.4.1. This is a minor point release, but includes some exciting new features. Some of the notable additions are the new uclust. Application controller, which currently supports uclust v1.1.579. And major additions to the Cookbook documentation. Courtesy of Tom Elliot. This release supports QIIME. Written by Greg Caporaso.
telliott99.blogspot.com
Python for Bioinformatics: Matplotlib (and SciPy) on OS X Mountain Lion
http://telliott99.blogspot.com/2013/06/matplotlib-and-scipy-on-os-x-mountain.html
Tuesday, June 18, 2013. Matplotlib (and SciPy) on OS X Mountain Lion. Yesterday I installed matplotlib. On my MacBook- -for about the 10th time. This can be a complex undertaking, but a basic installation is relatively easy, so I thought I would outline it here. Some things I did that made it easier:. To do the install I just made a second partition on my hard drive and installed OS X on it from a USB installer. If you've never done this before, good instructions for the USB part are here. But it avoids ...
clemente-lab.github.io
Software – Clemente Lab
http://clemente-lab.github.io/software
Developing computational methods to better understand the microbial world. Since we’re a lab focused on the computational side of biology, we have several bioinformatics software packages that we’ve either developed directly in our lab or in conjunction with other bioinformatics labs. Cology) is an open source software package for the comparison and analysis of microbial communities, taking users from their raw sequencing data through publication-quality graphics. The BIOM Format ( BI.
pycogent.wordpress.com
Announcing the release of PyCogent.app for OSX 10.6 | PyCogent
https://pycogent.wordpress.com/2011/03/02/announcing-the-release-of-pycogent-app-for-osx-10-6
News and Announcements regarding the Python Bioinformatics Toolkit, PyCogent. Announcing the release of PyCogent.app for OSX 10.6. This is our first release of a standalone PyCogent application (requires OSX 10.6 and can be downloaded from here. And give it a try! March 2, 2011 at 7:12 pm. Posted in PyCogent.app. Laquo; PyCogent 1.5 released. PyCogent 1.5.1 released. PyCogent Home and Documentation. Enter your email address to subscribe to this blog and receive notifications of new posts by email.
pycogent.wordpress.com
PyCogent related postdoc position available in comparative genomics | PyCogent
https://pycogent.wordpress.com/2011/12/08/pycogent-related-postdoc-position-available-in-comparative-genomics
News and Announcements regarding the Python Bioinformatics Toolkit, PyCogent. PyCogent related postdoc position available in comparative genomics. Is available in the Huttley lab to work on the development and application of improved models of sequence divergence. The work will build on the PyCogent toolkit for statistical modelling of molecular evolution. Position description and contact details for more information are available here. Full applications must be submitted before January 22nd 2012.
muralab.org
Mura Lab :: Software
http://muralab.org/software
At the University of Virginia. The following software packages, libraries, utilities, patches, benchmarks, etc. Have been developed in our lab or in collaboration with others, and are freely available:. P4B : Programming for Bioscientists. PaPy : Parallel Pipelines in Python for Distributed Data-processing. ZenCogent : 3D Biomolecular Structure Analysis in PyCogent. PBCTools : VMD plugin for manipulating MD trajectories computed under periodic boundary conditions, particularly for oblique cells. The goal...
p4b.muralab.org
Mura Lab :: Software
http://www.p4b.muralab.org/software
At the University of Virginia. The following software packages, libraries, utilities, patches, benchmarks, etc. Have been developed in our lab or in collaboration with others, and are freely available:. P4B : Programming for Bioscientists. PaPy : Parallel Pipelines in Python for Distributed Data-processing. ZenCogent : 3D Biomolecular Structure Analysis in PyCogent. PBCTools : VMD plugin for manipulating MD trajectories computed under periodic boundary conditions, particularly for oblique cells. The goal...
pycogent.wordpress.com
PyCogent 1.5.3 released | PyCogent
https://pycogent.wordpress.com/2012/09/15/pycogent-1-5-3-released
News and Announcements regarding the Python Bioinformatics Toolkit, PyCogent. PyCogent 1.5.3 released. This is a quick maintenance release to fix an error in the documentation build and a bug in an application controller. September 15, 2012 at 1:15 am. Laquo; PyCogent 1.5.2 released. PyCogent 1.9 released! PyCogent Home and Documentation. Enter your email address to subscribe to this blog and receive notifications of new posts by email. Join 23 other followers. Blog at WordPress.com.
telliott99.blogspot.com
Python for Bioinformatics: June 2013
http://telliott99.blogspot.com/2013_06_01_archive.html
Wednesday, June 19, 2013. Matplotlib followup for Python 3 on OS X 10.8. In my last post. I reported success in installing matplotlib on OS X. I realize now that this is not anything new to report, since the currently recommended install process (which I read belatedly today) in the. Is to use Homebrew (or MacPorts), which is what I did. I'm just happy to know that it works. I thought I'd say a word about Python 3 here. Brew install python3 - framework. So now we have:. Had a permissions problem, so I did.
