mar2015.archive.ensembl.org
Ensembl Tools
http://mar2015.archive.ensembl.org/info/docs/tools/index.html
We provide a number of ready-made tools for processing both our data and yours. We routinely delete results from our servers after 10 days, but if you have an ensembl account. You will be able to save the results indefinitely. Analyse your own variants and predict the functional consequences of known and unknown variants via our Variant Effect Predictor (VEP) tool. Convert a set of Ensembl IDs from a previous release into their current equivalents. To run the script). Ensembl release 79 - March 2015 WTSI.
blog.opentargets.org
Target Validation API Tutorial: Getting Started
https://blog.opentargets.org/api-getting-started-1
Target Validation API Tutorial: Getting Started. Since release 1.1 the Target Validation Platform exposes a public REST API. To allow programmatic retrieval of data served at targetvalidation.org. This is the same API that powers our website and gives full access to the data used to build www.targetvalidation.org. The Available methods are divided in to:. Methods that serve the core set of our data and that we will keep stable and support. Methods to get statistics and technical data about the API. Curl ...
grch37.ensembl.org
Variant Effect Predictor
http://grch37.ensembl.org/info/docs/tools/vep
Examples and use cases. The VEP determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions. Simply input the coordinates of your variants and the nucleotide changes to find out the:. Affected by the variants. Of the variants (e.g. upstream of a transcript, in coding sequence, in non-coding RNA, in regulatory regions). Scores for changes to protein sequence. Suits smaller volumes of data.
grch37.ensembl.org
Downloads - GRCh37 Archive browser 86
http://grch37.ensembl.org/downloads.html
Download a sequence or region. Click on the 'Export data' button in the lefthand menu of most pages to export:. GTF or GFF features. Custom datasets can be retrieved using the BioMart data-mining tool. You may find exploring this web-based query tool easier than extracting information direct from our databases. Write your own Perl scripts to retrieve small-to-medium datasets. All our data, as well as added functionality, is available through the Ensembl Perl API. You can also use our REST API.
mar2015.archive.ensembl.org
Variant Effect Predictor
http://mar2015.archive.ensembl.org/info/docs/tools/vep
Examples and use cases. The VEP determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions. Simply input the coordinates of your variants and the nucleotide changes to find out the:. Affected by the variants. Of the variants (e.g. upstream of a transcript, in coding sequence, in non-coding RNA, in regulatory regions). Scores for changes to protein sequence. Suits smaller volumes of data.
dec2015.archive.ensembl.org
Variant Effect Predictor
http://dec2015.archive.ensembl.org/info/docs/tools/vep
Examples and use cases. The VEP determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions. Simply input the coordinates of your variants and the nucleotide changes to find out the:. Affected by the variants. Of the variants (e.g. upstream of a transcript, in coding sequence, in non-coding RNA, in regulatory regions). Scores for changes to protein sequence. Suits smaller volumes of data.
useast.ensembl.org
Variant Effect Predictor
http://useast.ensembl.org/info/docs/tools/vep
Examples and use cases. The VEP determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions. Simply input the coordinates of your variants and the nucleotide changes to find out the:. Affected by the variants. Of the variants (e.g. upstream of a transcript, in coding sequence, in non-coding RNA, in regulatory regions). Scores for changes to protein sequence. Suits smaller volumes of data.
useast.ensembl.org
Downloads - Ensembl genome browser 85
http://useast.ensembl.org/downloads.html
Download a sequence or region. Click on the 'Export data' button in the lefthand menu of most pages to export:. GTF or GFF features. Custom datasets can be retrieved using the BioMart data-mining tool. You may find exploring this web-based query tool easier than extracting information direct from our databases. Write your own Perl scripts to retrieve small-to-medium datasets. All our data, as well as added functionality, is available through the Ensembl Perl API. You can also use our REST API.
jul2016.archive.ensembl.org
Downloads - Ensembl genome browser 85
http://jul2016.archive.ensembl.org/downloads.html
Download a sequence or region. Click on the 'Export data' button in the lefthand menu of most pages to export:. GTF or GFF features. Custom datasets can be retrieved using the BioMart data-mining tool. You may find exploring this web-based query tool easier than extracting information direct from our databases. Write your own Perl scripts to retrieve small-to-medium datasets. All our data, as well as added functionality, is available through the Ensembl Perl API. You can also use our REST API.
jul2016.archive.ensembl.org
Ensembl Tools
http://jul2016.archive.ensembl.org/info/docs/tools/index.html
We provide a number of ready-made tools for processing both our data and yours. We routinely delete results from our servers after 10 days, but if you have an ensembl account. You will be able to save the results indefinitely. No tools are available on this site. Please visit our main site. Use this data-mining tool to export custom datasets from Ensembl. Programmatic access to all Ensembl data using simple Perl scripts. Access Ensembl data using your favourite programming language.
