rmdb.stanford.edu

RMDB: RNA Mapping DataBase

Chemical Mapping Data of. Has upgraded to version. For online preview. More changes and updates are in progress. Please report bugs and make suggestions. We really appreciate your feedback. A Repository of RNA Structure Probing. Ase is an archive that contains results of diverse structural mapping experiments performed on ribonucleic acids. Results `ted to the repository are manually curated and annotated, ensuring reliability and quality of reported data. With a total of. Entries, describing more than.

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RMDB: RNA Mapping DataBase | rmdb.stanford.edu Reviews

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Chemical Mapping Data of. Has upgraded to version. For online preview. More changes and updates are in progress. Please report bugs and make suggestions. We really appreciate your feedback. A Repository of RNA Structure Probing. Ase is an archive that contains results of diverse structural mapping experiments performed on ribonucleic acids. Results `ted to the repository are manually curated and annotated, ensuring reliability and quality of reported data. With a total of. Entries, describing more than.

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5 rdat format specifications

6 validation tools

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8 analyze

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RMDB: RNA Mapping DataBase | rmdb.stanford.edu Reviews

https://rmdb.stanford.edu

Chemical Mapping Data of. Has upgraded to version. For online preview. More changes and updates are in progress. Please report bugs and make suggestions. We really appreciate your feedback. A Repository of RNA Structure Probing. Ase is an archive that contains results of diverse structural mapping experiments performed on ribonucleic acids. Results `ted to the repository are manually curated and annotated, ensuring reliability and quality of reported data. With a total of. Entries, describing more than.

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rmdb.stanford.edu

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RMDB: RNA Mapping DataBase

http://rmdb.stanford.edu/help/about

Chemical Mapping Data of. RMDB was originally an in-house repository of chemical mapping data collected by the Das lab. At Stanford University. It was created to enable structural, thermodynamic and kinetic comparisons across single-nucleotide-resolution RNA structure mapping experiments. With a total of. Datapoints, RMDB currently houses. Entries, describing more than. RNA constructs in several solution conditions and has been growing rapidly. In addition, it contributes greatly to the Eterna.

2

RMDB: RNA Mapping DataBase

http://rmdb.stanford.edu/tools

Chemical Mapping Data of. Tools for Analyses and Design. RMDB provides the following tools that can be used for the analysis of electropherograms in the context of RNA structure mapping. RDATKit is a package provides a set of Python and MATLAB. Scripts that facilitate saving and loading data to and from files with RDAT format. It also supports the ISATAB file format (see SNRNASM. The toolset is available as a GitHub repository:. You can download the source code directly with:. Or from our server:. REEFFI...

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RMDB: RNA Mapping DataBase

http://rmdb.stanford.edu/deposit/validate

Chemical Mapping Data of. Use this form to validate that a file that describes RNA chemical footprinting experiments follows the standards. Other consistency checks such as sequence and data agreement are also made. Specify an RMDB ID. Designed, built and managed by members of the. Database license under CC0. Site contents under CC-BY-SA-4.0.

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RMDB: RNA Mapping DataBase

http://rmdb.stanford.edu/browse

Chemical Mapping Data of. Browse RMDB by category. Designed, built and managed by members of the. Database license under CC0. Site contents under CC-BY-SA-4.0.

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RMDB: RNA Mapping DataBase

http://rmdb.stanford.edu/deposit/specs

Chemical Mapping Data of. Specification: RDAT File Format. RNA Data (RDAT) text file format is an annotation-based specification for RNA structure mapping experiments that is both computer friendly and can be easily read by humans. The RMDB database schema closely follows the organization of RDAT files, making it easier to manage and expose each entry’s data. RDAT files have a hierarchical structure and are comprised by three main sections: the. Section, and the. This hierarchy can be overridden by more ...

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t47.io

SIQI TIAN - Portfolio: RNA Mapping Database | T47.IO

https://t47.io/project/rmdb

Academic Data Sharing and Visualization. Https:/ rmdb.stanford.edu/. Inteactive reactivity heatmap using D3.js. Sliding side panels for clean layout. Browse by category with view switching. Prediction server of secondary structure (underway). Data sharing API (underway). Advanced search for data filtering (underway). Central hub for RNA tools. AWS deployment: EC2 ELB. RMDB logo inspired by RNA structure. And Server Admin Manual. Https:/ rmdb.stanford.edu/. Designed, built and managed by.

daslab.stanford.edu

DAS LAB + Stanford Biochemistry Department + Stanford University

https://daslab.stanford.edu/resources

Workflows for modeling RNA structure from sequence, including links to all relevant packages and documentation, are available on RiboKit. For RNA chemical mappers. Browse curated, quantitative data sets on 100,000 RNAs at the RNA Mapping Database. Create RNAs for nanomedicine at Eterna.

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rmdb.stanford.edu

RMDB: RNA Mapping DataBase

Chemical Mapping Data of. Has upgraded to version. For online preview. More changes and updates are in progress. Please report bugs and make suggestions. We really appreciate your feedback. A Repository of RNA Structure Probing. Ase is an archive that contains results of diverse structural mapping experiments performed on ribonucleic acids. Results `ted to the repository are manually curated and annotated, ensuring reliability and quality of reported data. With a total of. Entries, describing more than.

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