scgap.systemsbiology.net
SCGAP-UESC: LC and BC representation in prostate cDNA libraries
http://scgap.systemsbiology.net/resources/LC_BC_representation.php
SCGAP-UESC: LC and BC representation in prostate cDNA libraries. Luminal and basal cells. Luminal cell and basal cell representation in prostate cDNA libraries. The luminal and basal cell genes are placed by their cluster ID number. The various cDNA libraries are identified on the top of the grid pattern. Presence in a particular library is indicated by colored boxes: black for normal. Red for primary carcinoma. Light orange for primary carcinoma invasive. Lavender for xenografts and cancer cell lines.
scgap.systemsbiology.net
MISFISHIE
http://scgap.systemsbiology.net/standards/misfishie
Luminal and basal cells. Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE). There is now a MISFISHIE Working Group. Within the MGED Society. Which will provide a permanent home to this developing standard. We welcome all feedback from the community; information about how to join the discussion list can be found at the MISFISHIE Working Group website. This specification details the minimum information that should be provided when publishing, makin...
scgap.systemsbiology.net
Prostate cell-type specificity of CD molecules
http://scgap.systemsbiology.net/resources/CD_specificity.php
Prostate cell-type specificity of CD molecules. Luminal and basal cells. Prostate cell-type specificty of CD molecules. Am J Pathology 2002; 160:37-43. SCGAP UESC - ISB / UW.
scgap.systemsbiology.net
SCGAP Urologic Epithelial Stem Cells Project
http://scgap.systemsbiology.net/project_description.php
SCGAP Urologic Epithelial Stem Cells Project. Luminal and basal cells. Project Description with Specific Aims. Aim 1 To CD phenotype human prostate and bladder at high resolution with the use of confocal microscopy. Aim 2 To CD phenotype the mouse prostate and bladder. Aim 3 To profile more samples of basal and of stromal cells using uncultured cells. Aim 4 To confirm cell-type specific expression of genes that we identified by array analysis. A second component will contain array analysis results (obtai...
scgap.systemsbiology.net
Publications
http://scgap.systemsbiology.net/publications.php
Luminal and basal cells. Transcriptomes of Human Prostate Cells. Oudes AJ, Campbell DS, Sorensen CM, Walashek LS, True LD, Liu AY; BMC Genomics (2006) Apr 25;7(1):92. Stromal mesenchyme cell genes of the human prostate and bladder. Goo YA. Goodlett DR, Pascal LE, Worthington KD, Vessella RL, True LD, Liu AY; BMC Urology 5 (2005) no. 17. Application of Affymetrix array and Massively Parallel Signature Sequencing for identification of genes involved in prostate cancer progression.
scgap.systemsbiology.net
SCGAP UESC Data Access
http://scgap.systemsbiology.net/standards
SCGAP UESC Data Access. Luminal and basal cells. To this end, we have adopted MAGE-OM/ML and MIAME. As the most suitable standards for microarray data. We are currently developing a standard for Immunohistochemistry, in situ hybridization, and other gene expression localization experiments called MISFISHIE. SCGAP UESC - ISB / UW.
scgap.systemsbiology.net
SCGAP-UESC: Prostate Anatomy
http://scgap.systemsbiology.net/figures/Prostate_Anatomy.php
Luminal and basal cells. Anatomy of the Prostate. SCGAP UESC - ISB / UW.
scgap.systemsbiology.net
SCGAP UESC Software Information
http://scgap.systemsbiology.net/software
SCGAP UESC Software Information. Luminal and basal cells. Software available exclusively here. Software or scripts exclusively associated with this project will be posted here. SCGAP GeneExpression via SOAP Test Software. Original test code (obsolete). Second version test code - 2003-11-10 ( scgap-soap-0.02.tgz - 2.5 KB gzipped tar file. Links to Software Available Elsewhere. Links to some interesting software that is hosted elsewhere are posted here. ISB Microarray Processing Software.
scgap.systemsbiology.net
MAGE Project
http://scgap.systemsbiology.net/standards/mage_miame.php
Luminal and basal cells. MAGE (MicroArray Gene Expression). MAGE is being sponsored by the MGED Group (Microarray Gene Expression Database Group) which was originally repsonsible for MAML and is now providing MAGE. MIAME (Minimum Information About a Microarray Experiment). Microarray Gene Expression Database Group) Home Page. Journal article describing MAGE in Genome Biology. If link fails, see local copy. SourceForge Home for MAGE-OM/ML. MicroArray Gene Expression - Object Model/Markup Language).
