seqexpress.com seqexpress.com

seqexpress.com

SeqExpress

SeqExpress is an integrated analysis and desktop visualisation program for gene expression experiments. SeqExpress 1.3 is available. This is the first release to support the integration of heterogeneous information about gene function, gene expression and chromosome location. Linked visualisations are provided to allow for the visual exploration. Of expression experiments, chromosome features, ontology graphs, hierarchies, clusters and probabilistic models. SeqExpress can also be used to create models.

http://www.seqexpress.com/

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SeqExpress | seqexpress.com Reviews
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SeqExpress is an integrated analysis and desktop visualisation program for gene expression experiments. SeqExpress 1.3 is available. This is the first release to support the integration of heterogeneous information about gene function, gene expression and chromosome location. Linked visualisations are provided to allow for the visual exploration. Of expression experiments, chromosome features, ontology graphs, hierarchies, clusters and probabilistic models. SeqExpress can also be used to create models.
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1 download
2 installation
3 related documents
4 what's new
5 and graphs
6 is provided
7 overview
8 visualisations
9 genome feature visualisations
10 expression data visualisations
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SeqExpress | seqexpress.com Reviews

https://seqexpress.com

SeqExpress is an integrated analysis and desktop visualisation program for gene expression experiments. SeqExpress 1.3 is available. This is the first release to support the integration of heterogeneous information about gene function, gene expression and chromosome location. Linked visualisations are provided to allow for the visual exploration. Of expression experiments, chromosome features, ontology graphs, hierarchies, clusters and probabilistic models. SeqExpress can also be used to create models.

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seqexpress.com seqexpress.com
1

Installation

http://www.seqexpress.com/installation.htm

The installer will only work if the .NET framework is installed. File, this will unpack the distribution and start the installation. If .NET is installed then the main dialog for the installation will now appear, you should select the next button. Now decide where you wish to install SeqExpress, and then select next. For SeqExpress Server Release. File to start the installation The distribution will unpack itself and once complete the installation process will start. Another screen will appear, after whi...

2

Introduction

http://www.seqexpress.com/help/MainViewer.htm

SeqExpress provides a number of visualisations. Or if you are using the server version you can use the tutorial on how to load GEO information into the SeqExpress server. Showing a SeqExpress session, where a series of models have been used to analyse the data. The expression profiles and genome locations of genes that best fit one of models have been selected. The tabbed pane on the left of SeqExpress provides access to the following elements of functionality:. Graphs and hierarchies of genes can be con...

3

Untitled Document

http://www.seqexpress.com/help/seqgenome.htm

SeqGenome is a tool for browsing genomes and associated features, it can also be used in conjunction with SeqExpress to study correlations between chromosome location and gene expression. SeqGenome supports the loading of features from GFF files and alignments from PSL files. Data from any number of different files can be loaded, combined and browsed. Loading a Data File. The features can be navigated to directly using the tree on the right hand side or by directly selecting a region in either of the two...

4

Untitled Document

http://www.seqexpress.com/help/modelgraphviews.htm

Model and Hierarchy visualisations. Visualisations are provided for the analysis of the results of both hierarchical clustering and probabilistic mixture modeling. The visualisations are:. Are provided for exploring the results of a mixture model analysis by showing the probabilities of each gene belonging to each model. Are provided for viewing the hierarchical relationships within the data which have been established using one of the hierarchical cluster techniques. Hierarchical clustering information ...

5

Untitled Document

http://www.seqexpress.com/help/clusterviews.htm

A number of visualisation are provided for the examination of gene expression information. Are provided to examine differences/similarities between the clusters resulting from an individual analysis/algorithm. Is provided to compare the results of two different cluster analyses or the results of a cluster analysis against a biological relevant categorization (e.g. cell cycle, disease state, regulatory networks information). This tools is designed to give an indication as to the biological behaviour of th...

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SeqExpress is an integrated analysis and desktop visualisation program for gene expression experiments. SeqExpress 1.3 is available. This is the first release to support the integration of heterogeneous information about gene function, gene expression and chromosome location. Linked visualisations are provided to allow for the visual exploration. Of expression experiments, chromosome features, ontology graphs, hierarchies, clusters and probabilistic models. SeqExpress can also be used to create models.

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