seqscoring.org

SEQscoring

Welcome to the SEQscoring homepage! The purpose of this site is to help you analyze data from large re-sequencing projects! It will help you extract the most likely causative variants. For a specific trait or disease by looking at degree of conservation and by comparing cases and controls. It could also help you to find genomic regions likely to have been under strong artificial selection. Your detected SNPs and indels will be scored by conservation. Start by scoring of your files! SLU, Sweden 2014.

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Welcome to the SEQscoring homepage! The purpose of this site is to help you analyze data from large re-sequencing projects! It will help you extract the most likely causative variants. For a specific trait or disease by looking at degree of conservation and by comparing cases and controls. It could also help you to find genomic regions likely to have been under strong artificial selection. Your detected SNPs and indels will be scored by conservation. Start by scoring of your files! SLU, Sweden 2014.

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SEQscoring | seqscoring.org Reviews

https://seqscoring.org

Welcome to the SEQscoring homepage! The purpose of this site is to help you analyze data from large re-sequencing projects! It will help you extract the most likely causative variants. For a specific trait or disease by looking at degree of conservation and by comparing cases and controls. It could also help you to find genomic regions likely to have been under strong artificial selection. Your detected SNPs and indels will be scored by conservation. Start by scoring of your files! SLU, Sweden 2014.

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seqscoring.org

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SEQscoring

http://www.seqscoring.org/index.php

Welcome to the SEQscoring homepage! The purpose of this site is to help you analyze data from large re-sequencing projects! It will help you extract the most likely causative variants. For a specific trait or disease by looking at degree of conservation and by comparing cases and controls. It could also help you to find genomic regions likely to have been under strong artificial selection. Your detected SNPs and indels will be scored by conservation. Start by scoring of your files! SLU, Sweden 2014.

2

SEQscoring

http://www.seqscoring.org/resource.php

SEQscoring uses tables of conservation scores provided by:. Ensembl Genome Browser at http:/ www.ensembl.org/index.html. UCSC Genome Browser at http:/ genome.ucsc.edu. The 29mammals consortium at: http:/ genomewiki.cse.ucsc.edu/index.php/29mammals. Https:/ www.broadinstitute.org/scientific-community/science/projects/mammals-models/29-mammals-project-supplementary-info. SEQscoring gives access to conservation scores for the following species:. Btau 4.0, bosTau6. Enredo and Pecan: Genome-wide mammalian con...

3

SEQscoring

http://www.seqscoring.org/license.php

At the Swedish University of Agricultural Sciences. This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. Http:/ www.gnu.org/licenses/. We don't take any responsibilty for the use or results of these services. SLU, Sweden 2010.

4

SEQscoring

http://www.seqscoring.org/casecontrol.php

It is possible to upload zip.Archives of scored SNP files. Then keep cases and controls separate (no naming of samples). Upload scored SNP files. Mark case or control. Fisher's exact allelic test:. SLU, Sweden 2010.

5

SEQscoring

http://www.seqscoring.org/coverage.php

Please split your files by chromosome before performing the coverage test i.e. there should not be data from more than one chromosome in each file compared. Mark case or control. Check every x position:. Please note that for large files the number of positions checked can be overruled. See Get Started for more information. SLU, Sweden 2010.

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Welcome to the SEQscoring homepage! The purpose of this site is to help you analyze data from large re-sequencing projects! It will help you extract the most likely causative variants. For a specific trait or disease by looking at degree of conservation and by comparing cases and controls. It could also help you to find genomic regions likely to have been under strong artificial selection. Your detected SNPs and indels will be scored by conservation. Start by scoring of your files! SLU, Sweden 2014.

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