setter.projekty.ms.mff.cuni.cz

Setter

SETTER - pairwise RNA alignment. MultiSETTER - multiple RNA alignment. Batch of RNA molecules. Eg 3RG5:B 3TUP:T 3SD1:A. Upload file with PDB codes. Identical pair nt type modifier. Is the number of the GSSUs in the first structure and n. Is the number of the GSSUs in the second structure. The default value of 3 represents a very good compromise between the speed and the accuracy of the algorithm." /. No loop - stem percentage. Statistics in the result page will be valid only for default parameter values.

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Setter | setter.projekty.ms.mff.cuni.cz Reviews

<META> DESCRIPTION

SETTER - pairwise RNA alignment. MultiSETTER - multiple RNA alignment. Batch of RNA molecules. Eg 3RG5:B 3TUP:T 3SD1:A. Upload file with PDB codes. Identical pair nt type modifier. Is the number of the GSSUs in the first structure and n. Is the number of the GSSUs in the second structure. The default value of 3 represents a very good compromise between the speed and the accuracy of the algorithm. /. No loop - stem percentage. Statistics in the result page will be valid only for default parameter values.

<META> KEYWORDS

1 authors

2 setter

3 multisetter

4 query

5 results

6 rna molecule

7 pdb code

8 chain id

9 upload pdb file

10 place pdb codes

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authors,setter,multisetter,query,results,rna molecule,pdb code,chain id,upload pdb file,place pdb codes,parameters,neck shift,pair distance threshold,top k gssu,where m,early termination,reset,run setter,rna molecules,references

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Setter | setter.projekty.ms.mff.cuni.cz Reviews

https://setter.projekty.ms.mff.cuni.cz

SETTER - pairwise RNA alignment. MultiSETTER - multiple RNA alignment. Batch of RNA molecules. Eg 3RG5:B 3TUP:T 3SD1:A. Upload file with PDB codes. Identical pair nt type modifier. Is the number of the GSSUs in the first structure and n. Is the number of the GSSUs in the second structure. The default value of 3 represents a very good compromise between the speed and the accuracy of the algorithm." /. No loop - stem percentage. Statistics in the result page will be valid only for default parameter values.

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setter.projekty.ms.mff.cuni.cz

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Setter - Authors

http://setter.projekty.ms.mff.cuni.cz/authors

RNDr David Hoksza, Ph.D. Institute of Chemical Technology Prague. Laboratory of Informatics and Chemistry. Charles University in Prague. Assoc prof. Daniel Svozil, Ph.D. Institute of Chemical Technology Prague. Laboratory of Informatics and Chemistry. MSc Petr Čech, Ph.D. Institute of Chemical Technology Prague. Laboratory of Informatics and Chemistry. Hoksza D., Svozil D. Efficient RNA pairwise structure comparison by SETTER method. Bioinformatics. 28 (14), 1858-1864. 40 (W1), W42-W48.

2

Setter - Help

http://setter.projekty.ms.mff.cuni.cz/help/parameters

Users can switch between two alignment types: pairwise (SETTER). The pairwise alignment allows users to align RNA structures in a single. The tab menu of the alignment type selection. Format of the entries for the RNA molecule in the single mode of the pairwise alignment should look like the following example:. An example of filled-in entries for the single SETTER mode. And upload PDB file. Icon Clear all entries in the current block by pressing the. Appearance of the entries for the 2. Entry takes a sta...

3

Setter - Help

http://setter.projekty.ms.mff.cuni.cz/help/index

Users can switch between two alignment types: pairwise (SETTER). The pairwise alignment allows users to align RNA structures in a single. The tab menu of the alignment type selection. Format of the entries for the RNA molecule in the single mode of the pairwise alignment should look like the following example:. An example of filled-in entries for the single SETTER mode. And upload PDB file. Icon Clear all entries in the current block by pressing the. Appearance of the entries for the 2. Entry takes a sta...

4

Setter - Help

http://setter.projekty.ms.mff.cuni.cz/help/inputs

Users can switch between two alignment types: pairwise (SETTER). The pairwise alignment allows users to align RNA structures in a single. The tab menu of the alignment type selection. Format of the entries for the RNA molecule in the single mode of the pairwise alignment should look like the following example:. An example of filled-in entries for the single SETTER mode. And upload PDB file. Icon Clear all entries in the current block by pressing the. Appearance of the entries for the 2. Entry takes a sta...

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ndb-mirror-3.rutgers.edu

Nucleic Acid Tools

http://ndb-mirror-3.rutgers.edu/ndbmodule/services/index.html

A Portal for Three-dimensional Structural Information about Nucleic Acids. As of 17-Aug-2016 number of released structures: 8433. Search for released structures. A collection of representative base pairs and heatmaps for each base pair family. RNA 3D Motif Atlas. A representative collection of RNA 3D internal and hairpin loop motifs. Petrov, A.I., Zirbel, C.L., Leontis, N.B. (2013) Automated classification of RNA 3D motifs and the RNA 3D motif atlas. RNA. Of RNA-containing 3D structures. A webserver for ...

ndb-mirror-2.rutgers.edu

Nucleic Acid Tools

http://ndb-mirror-2.rutgers.edu/ndbmodule/services/index.html

A Portal for Three-dimensional Structural Information about Nucleic Acids. As of 17-Aug-2016 number of released structures: 8433. Search for released structures. A collection of representative base pairs and heatmaps for each base pair family. RNA 3D Motif Atlas. A representative collection of RNA 3D internal and hairpin loop motifs. Petrov, A.I., Zirbel, C.L., Leontis, N.B. (2013) Automated classification of RNA 3D motifs and the RNA 3D motif atlas. RNA. Of RNA-containing 3D structures. A webserver for ...

ndbserver.rutgers.edu

Nucleic Acid Tools

http://ndbserver.rutgers.edu/ndbmodule/services/index.html

A Portal for Three-dimensional Structural Information about Nucleic Acids. As of 17-Aug-2016 number of released structures: 8433. Search for released structures. A collection of representative base pairs and heatmaps for each base pair family. RNA 3D Motif Atlas. A representative collection of RNA 3D internal and hairpin loop motifs. Petrov, A.I., Zirbel, C.L., Leontis, N.B. (2013) Automated classification of RNA 3D motifs and the RNA 3D motif atlas. RNA. Of RNA-containing 3D structures. A webserver for ...

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