silenegenomics.biology.virginia.edu

Silene Transcriptome

Welcome to the Silene vulgaris. Transcriptome project. This site provides access to data generated from high throughput sequencing of expressed genes in the flowering plant Silene vulgaris. A widely used model in studies of ecology and evolution. Read more. To learn more about this resource or to cite these data, please see our paper in Molecular Ecology Resources. Gilmer Hall, 059. Charlottesville, VA 22904. Last Modified: Wednesday, 07-Dec-2011 17:15:44 EST.

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Silene Transcriptome | silenegenomics.biology.virginia.edu Reviews

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Welcome to the Silene vulgaris. Transcriptome project. This site provides access to data generated from high throughput sequencing of expressed genes in the flowering plant Silene vulgaris. A widely used model in studies of ecology and evolution. Read more. To learn more about this resource or to cite these data, please see our paper in Molecular Ecology Resources. Gilmer Hall, 059. Charlottesville, VA 22904. Last Modified: Wednesday, 07-Dec-2011 17:15:44 EST.

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3 silene vulgaris

4 sequencing

5 assembly and annotation

6 blast

7 annotation search

8 downloads

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Silene Transcriptome | silenegenomics.biology.virginia.edu Reviews

https://silenegenomics.biology.virginia.edu

Welcome to the Silene vulgaris. Transcriptome project. This site provides access to data generated from high throughput sequencing of expressed genes in the flowering plant Silene vulgaris. A widely used model in studies of ecology and evolution. Read more. To learn more about this resource or to cite these data, please see our paper in Molecular Ecology Resources. Gilmer Hall, 059. Charlottesville, VA 22904. Last Modified: Wednesday, 07-Dec-2011 17:15:44 EST.

INTERNAL PAGES

silenegenomics.biology.virginia.edu

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Silene Transcriptome

http://silenegenomics.biology.virginia.edu/index.html

Welcome to the Silene vulgaris. Transcriptome project. This site provides access to data generated from high throughput sequencing of expressed genes in the flowering plant Silene vulgaris. A widely used model in studies of ecology and evolution. Read more. To learn more about this resource or to cite these data, please see our paper in Molecular Ecology Resources. Gilmer Hall, 059. Charlottesville, VA 22904. Last Modified: Wednesday, 07-Dec-2011 17:15:44 EST.

2

Annotation and Assembly, Silene Transcriptome

http://silenegenomics.biology.virginia.edu/assembly.html

Transcriptome Assembly and Annotation. Sequencing reads from the Silene vulgaris. Approximately 87% of the 959,520 sequencing reads were assembled into contigs with a total length of 25.4 Mb. These contigs were organized into 18,178 isogroups, representing a total of 37,976 isotigs. The average isotig size is 1.3 kb. Based on the top BLAST hits, transcriptome sequences were associated with gene names, protein domains, and gene ontology (GO) annotations. Gilmer Hall, 059. Charlottesville, VA 22904.

3

BLAST, Silene Transcriptome

http://silenegenomics.biology.virginia.edu/blast.html

BLAST against assembled transcriptome sequences. Blastn (for nucleotide query sequences). Tblastn (for amino acid query sequences). Nucleotide or amino acid query sequence (. To perform BLAST searches with large query files or to modify BLAST parameters,. We suggest downloading the datasets. And using local BLAST. Gilmer Hall, 059. Charlottesville, VA 22904. Last Modified: Tuesday, 26-Apr-2011 17:19:45 EDT.

4

About, Silene Transcriptome

http://silenegenomics.biology.virginia.edu/species.html

Is a member of the carnation or pink family (Caryophyllaceae). It is the most well known representative of a group of closely related Silene. Species referred to as the bladder campions. It is native to Eurasia, where it is geographically widespread. It has also been introduced all over the world. Thriving in distributed habitats such as roadsides, it has become invasive in a number of regions including North America. Life History and Breeding System. A number of species in the genus Silene.

5

Downloads, Silene Transcriptome

http://silenegenomics.biology.virginia.edu/downloads.html

Download the Transcriptome Data. 454 Sequence Data (processed to remove custom adaptors). FASTA format (with associated .qual file). Single Nucleotide Polymorphism (SNP) Identification. Msatcommander analysis output (v1). Gilmer Hall, 059. Charlottesville, VA 22904. Last Modified: Tuesday, 07-Jun-2011 13:24:12 EDT.

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Brian J. Sanderson. Grad student and Postdoc Association. Mountain Lake Biological Station. Last updated 16 Feb 2015. Powered by Jekyll. Theme by Matt Harzewski.

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Silene Transcriptome

Welcome to the Silene vulgaris. Transcriptome project. This site provides access to data generated from high throughput sequencing of expressed genes in the flowering plant Silene vulgaris. A widely used model in studies of ecology and evolution. Read more. To learn more about this resource or to cite these data, please see our paper in Molecular Ecology Resources. Gilmer Hall, 059. Charlottesville, VA 22904. Last Modified: Wednesday, 07-Dec-2011 17:15:44 EST.

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