single.topcons.net
TOPCONS-single: Prediction of membrane protein topologyTOPCONS-single
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TOPCONS-single
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TOPCONS-single: Prediction of membrane protein topology | single.topcons.net Reviews
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TOPCONS-single
single.topcons.net
TOPCONS-single: Prediction of membrane protein topology
http://single.topcons.net/index.php?about=TOPCONS-single
Saturday, September 3 2016. Pre-run predictions for whole genomes. TOPCONS-single is freely available for academic use from our subversion server. For installation instructions, refer to the README file in the directory. Topcons single full fasta.txt. Topcons single multi spanning fasta.txt. Topcons single single spanning fasta.txt. Topcons single full correct topology.txt. Topcons single multi spanning correct topology.txt. Topcons single single spanning correct topology.txt.
TOPCONS-single: Prediction of membrane protein topology
http://single.topcons.net/index.php
Saturday, September 3 2016. Pre-run predictions for whole genomes. Prediction of membrane protein topology without BLAST runs. TOPCONS-single allows for requests of up to 100000 protein sequences, and is appropriate for large benchmark sets and full proteome scans. If you have only one or a few sequences, use the TOPCONS server. For better predictive performance. Enter up to 100000 protein sequences in FASTA. Alternatively, upload a text file containing up to 100000 protein sequences in FASTA. Best &alph...
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Online Analysis Tools - Protein Secondary Structure
http://www.molbiol-tools.ca/Protein_secondary_structure.htm
Secondary structure prediction - is a HNN (Hidden Neural Network) secondary structure prediction program that uses the PSI-BLAST algorithm to produce a PSSM for the input sequence, which it then uses to perform its prediction. ( Reference:. K Lin et al. 2005. Bioinformatics 21:. Technical University of Berlin, Germany). 1D Protein Structure Prediction Server. For a metasite linked to a wide range of protein sequence analysis and structure predictions online programs, I recommend PredictProtein. Predictio...
BENCHMARK OF MEMBRANE HELIX PREDICTIONS FROM SEQUENCE
http://www.canoz.com/benchmark/benchmark.pl
BENCHMARK OF MEMBRANE HELIX PREDICTIONS FROM SEQUENCE. This benchmark server allows you to compare membrane helix prediction and topology prediction methods that have made their predictions based on amino acid sequence. If you want to compare methods :. 1 Choose the methods you want to compare and/or upload your own predictions. 2 Select the benchmark dataset (standard or personalized). 3 Specify the benchmark criteria. 1 Choose the methods you want to compare and/or upload your own predictions:. 2 Selec...
Software
http://bioinfo.se/software
Protein evolution. Protein structure predictions. Bioinformatics. Our ambition is to develop better methods for prediction of protein structure and function. The most successful methods are provided as web-based servers. Web-services developed through EMBRACE. A program for homology modelling. A program for Hidden Markov Model-based homology scoring. Ultra rapid, accurate model quality assessment for protein structure prediction. A predictor of protein quality. Membrane Protein Topology Prediction Methods.
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TOPCONS-single: Prediction of membrane protein topology
Friday, August 14 2015. Pre-run predictions for whole genomes. Prediction of membrane protein topology without BLAST runs. TOPCONS-single allows for requests of up to 100000 protein sequences, and is appropriate for large benchmark sets and full proteome scans. If you have only one or a few sequences, use the TOPCONS server. For better predictive performance. Enter up to 100000 protein sequences in FASTA. Alternatively, upload a text file containing up to 100000 protein sequences in FASTA. Best α-h...
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