stim.ee.uh.edu

STIM Laboratory | Scalable Tissue Imaging and Modeling

Scalable Tissue Imaging and Modeling. ECE 3340 Numerical Methods. High-throughput instrumentation for whole-organ data collection at microscopic resolution. GPU-based techniques for visualization of terabytes-scale data sets. Software and algorithms for building fast forward models to solve complex inverse problems. June 1, 2015. 2015-5-20] A press release on our stain-less staining work has been published in the The Hindu. Has been published in JOSA A. 2015-5-01] A new $2M project funded by CPRIT.

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STIM Laboratory | Scalable Tissue Imaging and Modeling | stim.ee.uh.edu Reviews

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Scalable Tissue Imaging and Modeling. ECE 3340 Numerical Methods. High-throughput instrumentation for whole-organ data collection at microscopic resolution. GPU-based techniques for visualization of terabytes-scale data sets. Software and algorithms for building fast forward models to solve complex inverse problems. June 1, 2015. 2015-5-20] A press release on our stain-less staining work has been published in the The Hindu. Has been published in JOSA A. 2015-5-01] A new $2M project funded by CPRIT.

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3 research

4 publications

5 funding

6 education

7 software development

8 software build guide

9 lab resources

10 software

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STIM Laboratory | Scalable Tissue Imaging and Modeling | stim.ee.uh.edu Reviews

https://stim.ee.uh.edu

Scalable Tissue Imaging and Modeling. ECE 3340 Numerical Methods. High-throughput instrumentation for whole-organ data collection at microscopic resolution. GPU-based techniques for visualization of terabytes-scale data sets. Software and algorithms for building fast forward models to solve complex inverse problems. June 1, 2015. 2015-5-20] A press release on our stain-less staining work has been published in the The Hindu. Has been published in JOSA A. 2015-5-01] A new $2M project funded by CPRIT.

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GitLab

Open source software to collaborate on code. Manage git repositories with fine grained access controls that keep your code secure. Perform code reviews and enhance collaboration with merge requests. Each project can also have an issue tracker and a wiki.

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stim.ee.uh.edu

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Instrumentation - STIM Laboratory

http://stim.ee.uh.edu/links/instrumentation

Scalable Tissue Imaging and Modeling. ECE 3340 - Numerical Methods. ECE 6397 - GPU Programming. External Resources: Tutorials, Books, Guides. This text can be changed from the Miscellaneous section of the settings page. Dolor sit amet, consectetur adipiscing. Elit, cras ut imperdiet augue. Powered by Paяabola.

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BimSim - STIM Laboratory

http://stim.ee.uh.edu/resources/software/bimsim

Scalable Tissue Imaging and Modeling. ECE 3340 - Numerical Methods. ECE 6397 - GPU Programming. External Resources: Tutorials, Books, Guides. Figure: (left) The imaginary part of an EM field scattered by three spheres. (right) The field magnitude at the surface of each sphere shown as a 3D model. Input options for BIM-Sim can be found using:. And I will discuss a few interesting examples below. The near-field is composed of three components: the incident field produced by a point source passing through f...

3

NetMets - STIM Laboratory

http://stim.ee.uh.edu/resources/software/netmets

Scalable Tissue Imaging and Modeling. ECE 3340 - Numerical Methods. ECE 6397 - GPU Programming. External Resources: Tutorials, Books, Guides. NetMets provides a metric for comparing the spatial geometry and connectivity of two interconnected graphs, like those produced using neuron and vascular/microvascular centerline segmentation. Networks can be provided in either SWC or OBJ format and can have interconnected components (such as cycles). Value describing the metric tolerance:. GFPR gFNR cFPR cFNR.

4

Funding - STIM Laboratory

http://stim.ee.uh.edu/sample-page/funding

Scalable Tissue Imaging and Modeling. ECE 3340 - Numerical Methods. ECE 6397 - GPU Programming. External Resources: Tutorials, Books, Guides. Large-scale reconstruction of microvascular networks. National Institutes of Health (NIH) / National Library of Medicine (NLM). Pathway to Independence Award (R00). September 2014 - August 2017. 750k over 3 years. High-throughput instrumentation and analysis for whole tumor phenotyping. Cancer Prevention and Research Institute of Texas (CPRIT). 2M over 4 years.

5

Education - STIM Laboratory

http://stim.ee.uh.edu/education

Scalable Tissue Imaging and Modeling. ECE 3340 - Numerical Methods. ECE 6397 - GPU Programming. External Resources: Tutorials, Books, Guides. This text can be changed from the Miscellaneous section of the settings page. Dolor sit amet, consectetur adipiscing. Elit, cras ut imperdiet augue. Powered by Paяabola.

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STIM Laboratory | Scalable Tissue Imaging and Modeling

Scalable Tissue Imaging and Modeling. ECE 3340 Numerical Methods. High-throughput instrumentation for whole-organ data collection at microscopic resolution. GPU-based techniques for visualization of terabytes-scale data sets. Software and algorithms for building fast forward models to solve complex inverse problems. June 1, 2015. 2015-5-20] A press release on our stain-less staining work has been published in the The Hindu. Has been published in JOSA A. 2015-5-01] A new $2M project funded by CPRIT.

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