tico.gobics.de

TiCo - TIS Correction

TiCo is a tool for postprocessing predictions of prokaryotic genes with the objective to improve the accuracy of annotated Translation Initiation Sites (TIS). Currently the tool can be used to analyze and reannotate predictions obtained by the program GLIMMER2.x (Delcher. TiCo provides a GLIMMER-like output which contains the relocated gene starts together with some information for the evaluation of the quality of the corresponding TIS. The results are also available in GFF (. Form to TiCo's web interface.

http://tico.gobics.de/

OVERVIEW OF tico.gobics.de

TRAFFIC RANK

>1,000,000

REVIEWS

0

PAGES IN THIS WEBSITE

8

LINKS TO THIS WEBSITE

CONTACTS

ADDRESSES

SOCIAL LINKS

ONLINE SINCE

WEBSITE DETAILS

SEO

PAGES

SIMILAR SITES

TRAFFIC RANK FOR TICO.GOBICS.DE

TODAY'S RATING

>1,000,000

TRAFFIC RANK - AVERAGE PER MONTH

BEST MONTH

May

AVERAGE PER DAY Of THE WEEK

HIGHEST TRAFFIC ON

Thursday

TRAFFIC BY CITY

Sign up

CUSTOMER REVIEWS

Average Rating: 3.7 out of 5 with 14 reviews

5 star

6

4 star

2

3 star

4

2 star

0

1 star

2

Hey there! Start your review of tico.gobics.de

AVERAGE USER RATING

Write a Review

WEBSITE PREVIEW

LOAD TIME

0.6 seconds

FAVICON PREVIEW

16x16
32x32

CONTACTS AT TICO.GOBICS.DE

ADD CONTACT

Login

TO VIEW CONTACTS

Remove Contacts

FOR PRIVACY ISSUES

CONTENT

PAGES IN
THIS WEBSITE

8

SSL

EXTERNAL LINKS

2

SITE IP

134.76.74.157

LOAD TIME

0.609 sec

SCORE

6.2

PAGE TITLE

TiCo - TIS Correction | tico.gobics.de Reviews

<META> DESCRIPTION

TiCo is a tool for postprocessing predictions of prokaryotic genes with the objective to improve the accuracy of annotated Translation Initiation Sites (TIS). Currently the tool can be used to analyze and reannotate predictions obtained by the program GLIMMER2.x (Delcher. TiCo provides a GLIMMER-like output which contains the relocated gene starts together with some information for the evaluation of the quality of the corresponding TIS. The results are also available in GFF (. Form to TiCo's web interface.

<META> KEYWORDS

1 tico

2 introduction

3 algorithm

4 online submission

5 download

6 department

7 general description

8 et al

9 general feature format

10 with examples

CONTENT

Page content here

KEYWORDS ON PAGE

tico,introduction,algorithm,online submission,download,department,general description,et al,general feature format,with examples,view some results,obtained by tico,references,bioinformatics,bmc bioinformatics,nucleic acids res

SERVER

Apache/2.0.52 (Scientific Linux)

CONTENT-TYPE

iso-8859-1

GOOGLE PREVIEW

TiCo - TIS Correction | tico.gobics.de Reviews

https://tico.gobics.de

TiCo is a tool for postprocessing predictions of prokaryotic genes with the objective to improve the accuracy of annotated Translation Initiation Sites (TIS). Currently the tool can be used to analyze and reannotate predictions obtained by the program GLIMMER2.x (Delcher. TiCo provides a GLIMMER-like output which contains the relocated gene starts together with some information for the evaluation of the quality of the corresponding TIS. The results are also available in GFF (. Form to TiCo's web interface.

INTERNAL PAGES

tico.gobics.de

1

The TiCo algorithm

http://tico.gobics.de/algorithm.jsp

Classification of Candidate TIS Sequences. Our method is based on the analysis of candidate TIS sequences as obtained from the flanking regions of potential start codons. We implemented a clustering algorithm which performs an unsupervised classification of sequences according to. TIS and all other candidates within the same search range as. Starting with the above initial classification we iterate the following two successive steps:. Inhomogeneous second order probabilities models for the. TIS, all othe...

2

WeightsVis - Visualization of the weights matrix

http://tico.gobics.de/weights.jsp

Visualization of a weights matrix. WeightsVis-Visualization of the positional weights matrix (PWM) calculated by TiCo for E. coli. With the default parameters. The weights are provided with the TiCo-prediction (attached to the results-email for users of the web interface or written to the output directory of the stand-alone version). The tool WeightsVis is available from our download site. A short description of the usage is given in the README.

3

TiCo - Download

http://tico.gobics.de/download.jsp

Free download of TiCo stand-alone version. Download Datasets (tarball, 12 MB). Linux release of TiCo - Complete package. The complete packages contain:. Jars of TiCo 2.1 and Log4j (plus Mail and Activation for the version with mail interface). Matlab Libraries for Linux. Matlab compiler generated program for Linux. Configuration files for Linux. Matlab visualization program with bash starter script. TiCo21 (all inclusive) - with mail interface. TiCo21 (all inclusive) - with mail interface. Gsf2coord: Con...

4

TiCo - TIS Correction help page

http://tico.gobics.de/help.jsp

Input and output formats. A description of the input and output formats with examples can be found here. The following parameters are provided to adjust the consideration of alternative start sites for a putative gene. The parameter sigma is used to smooth the positional probability Markov Models. TIS A potential start site is defined as start codon. That shares the same reading frame of the respective gene, with no inframe stop codon between the start codon and the annotated stop. Of the search range.

5

TiCo - TIS-Correction

http://tico.gobics.de/ioexamples.jsp

Input and output formats]. TiCo input and output formats. For the TiCo prediction two types of input data are necessary. First a file with gene data and second a file with the corresponding nucleotide sequence is needed. The current version of the TiCo webinterface provides the following input and output formats. Sequence in Fasta format. Output in Simple Coord format. TiCo searches the file for the line “ Putative Genes: ” and reads all orfs from there on. Id left right strand[ score][#]. The genome seq...

UPGRADE TO PREMIUM TO VIEW 3 MORE

TOTAL PAGES IN THIS WEBSITE

8

LINKS TO THIS WEBSITE

molbiol-tools.ca

Online Analysis Tools - Translation

http://www.molbiol-tools.ca/Translation.htm

A number of excellent sites exist all of which permit translation in all six reading frames. I would recommend ORF Finder because of its visuals and Pipeline or GeneMark if you are seriously interested in identifying genes within your sequence. The latter two programs permit the analysis of long sequences (submit by attachment not in the box). Frameshift errors in DNA sequence - several sites are available. Genio/scan N. Mache). T Schliex et al. 2003. Nucl. Acids Res. 31:. Facilitates the identification ...

gobics.de

gobics.de: Software

http://gobics.de/department/software

University of Göttingen. Faculty of Biology and Psychology. Institute of Microbiology and Genetics. Software tools available through GOBICS (GÃ ttingen Bioinformatics Compute Server):. Alignment free sequence comparison. A web-server for fast comparative functional profiling of metagenomes. Gene prediction for eukaryotes. Ultra-fast functional profiling of large protein sequence collections. Clustering and Visualization of Metabolic Markers. Multiple sequence alignment; various program versions available.

UPGRADE TO PREMIUM TO VIEW 0 MORE

TOTAL LINKS TO THIS WEBSITE

2

OTHER SITES

tico.com.sa

مؤسسة تركي العالمية

tico.com.sg

Coming Soon | itas 2.0

Call Us 65 9679 9115. Email Us sales@tico.com.sg. Ctrlpa PA System ctrlpa.com/english. We're Currently Under Construction. We're Currently Under Construction. Upgrade to 2.0.

tico.cr

TICO - Welcome

Welcome to tico.cr, a new communication portal for all things Costa Rica. Pre-announcement: tico.cr will also be offering personalized e-mail forwarding aliases. In order to pre-reserve a yourname@tico.cr e-mail address contact us.

tico.de

tierschundco - EDV Microsoft Server Computer Detmold Lippe

Tierschundco - Ihr IT-Systemhaus aus Detmold. Regional, innovativ und spezialisiert. Die Tierschundco GmbH versteht sich als innovatives Full-Service IT-Unternehmen. Wir setzen auf ein ganzheitliches Konzept für den Mittelstand. Unsere Kernkompetenzen liegen in den Bereichen. Und Firewall- und Sicherheitslösungen. 1986 gegründet, haben wir uns auf die Planung, Realisierung und Betreuung von Informations- und Kommunikationssystemen spezialisiert. Durch die Vertiefung von Partnerschaften. Ihr Weg zu uns.

tico.fi

Tico Solutions

We're down for maintenance. Tico Solutions provides application development and hosting services. Feel free to email us to provide some feedback on our services, or to just say hello!

tico.gobics.de

TiCo - TIS Correction

TiCo is a tool for postprocessing predictions of prokaryotic genes with the objective to improve the accuracy of annotated Translation Initiation Sites (TIS). Currently the tool can be used to analyze and reannotate predictions obtained by the program GLIMMER2.x (Delcher. TiCo provides a GLIMMER-like output which contains the relocated gene starts together with some information for the evaluation of the quality of the corresponding TIS. The results are also available in GFF (. Form to TiCo's web interface.

tico.in

Tico.in-Powered by Johnson International Scientific High School- email: director@colegiocientifico.com

tico.info

Tico -- I Reject Your Reality and Substitute my own!

The Developer who loves his work. So, Yep, I am Tico, The Developer. This portfolio site is mine, and here I'll show you all my work. Take a look around! Hello I am Tico, Welcome! I am a boy from The Netherlands, currently 18 years old and still studying. In my free time, I like to make Windows Phone Apps, Websites and learning all about programming. I also like Xbox and am planning to become a Xbox One Indie Developer. HTML, CSS,. CMS ( Opencart, Wordpress, Joomla, Prestashop etc.). John Dane, iBerry.

tico.it

www.tico.it

Digitando Tico su Google, o su un qualsiasi altro motore di ricerca, ti aspettavi di trovare qualcosa di diverso. Ma visto che sei qui, trattieniti ancora un momento, e leggi questa storia. Tutto comincia con il fratello di Tico: il famigerato Tivo. Se, com'è probabile, sai già tutto di lui, spostati alla fine del sito. In caso contrario, prosegui (sempre se ti va, ovviamente). Uno che viveva male. Più che vivere, sopravviveva. Insieme alla moglie Tiva. E ai tre figlioletti Nte. Gentile sig. Tivo, Le...

tico.iut.ac.ir

اداره فناوری و ارتباط با صنعت |

با توجه به تعريف مأموريت سه گانه آموزش، پژوهش و فناوري براي دانشگاههاي برتر كشور، اداره فناوري و ارتباط با صنعت دانشگاه با ساختار و اهداف جديد، فعاليت‌ها و نيروهاي خود را در راستاي توسعه فناوري و گسترش ارتباط با صنايع، مراكز اقتصادي، سازمانها و بخش كشاورزي سازماندهي كرده است. ارتقاء كمي و كيفي ارتباط دانشگاه با مراكز اقتصادي و صنايع در سطوح بين‌المللي، ملي و استاني قانونمند كردن نحوه ارتباط دانشگاه با مراكز خارج از دانشگاه. فراهم شدن زمينه مشاركت اعضاي هيأت علمي و كارشناسان فعال و خبره.

tico.net

tico.net - This domain may be for sale!

Ticonet has been informing visitors about topics such as Tico Tico, 聊聊语音聊天室 and 免費視訊聊天室. Join thousands of satisfied visitors who discovered DJ Mix MP3 Gratuit, Bajar Videos De Musica Gratis and 视讯聊天室. This domain may be for sale!