tmanavigator.org
TMA NavigatorTMA Navigator is a free web service for tissue microarray data analysis and visualisation - including network inference, survival analysis, data exploration.
http://www.tmanavigator.org/
TMA Navigator is a free web service for tissue microarray data analysis and visualisation - including network inference, survival analysis, data exploration.
http://www.tmanavigator.org/
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TMA Navigator | tmanavigator.org Reviews
https://tmanavigator.org
TMA Navigator is a free web service for tissue microarray data analysis and visualisation - including network inference, survival analysis, data exploration.
tmanavigator.org
Survival analysis overview | TMA Navigator User Guide
http://www.tmanavigator.org/help/ancat_Survival_analysis
Mutual information network (KDE). Mutual information network (discrete). Kaplan-Meier (mixture model) plots. Survival analysis involves statistical testing to examine relationships of marker scores with survival. Patients are split into groups; the difference in survival between the groups is plotted graphically and tested for significance. A detailed introduction to the subject is given in the article [Clark et al. 2003 BJC 89:232]. A list of available analyses in this category is given below. Table Cli...
Networks overview | TMA Navigator User Guide
http://www.tmanavigator.org/help/ancat_Networks
Mutual information network (KDE). Mutual information network (discrete). Kaplan-Meier (mixture model) plots. Networks are a powerful way of visualising and interpreting the relationships between a set of markers (typically protein expression). TMA Navigator. Where markers (nodes) are displayed as rectangles and significant relationships (edges) drawn as lines that connect pairs of markers. An example protein network. With edges representing significant Spearman correlation relationships. Table under the ...
Marker score data requirements | TMA Navigator User Guide
http://www.tmanavigator.org/help/score-requirements
Mutual information network (KDE). Mutual information network (discrete). Kaplan-Meier (mixture model) plots. Marker score data requirements. Marker scores can be input in spreadsheet format (Microsoft Excel), or alternatively in comma-separated (CSV) or tab-separated (TSV) formats. In all cases, the same tabular layout is used ( see below. Summary of main requirements:. Scores are arranged in a grid of samples (rows) and markers (columns). The following example datasets are available for download. Th...
Data exploration overview | TMA Navigator User Guide
http://www.tmanavigator.org/help/ancat_Data_exploration
Mutual information network (KDE). Mutual information network (discrete). Kaplan-Meier (mixture model) plots. Data exploration is a category of analyses encompassing visualising the distribution of marker scores as well as score clustering and modelling. Marker scores are visualised using a plot with score values on the x-axis, and the frequency of those scores on the y-axis. For continuous scores, density plots. Show the distribution of scores as a line, for categorical scores histograms.
Demonstration | TMA Navigator
http://www.tmanavigator.org/demo
Start workflow with example dataset. Go straight to example results. Select a dataset name to begin. Breast Cancer 1 (AQUA). 128 breast cancer patients, 9 proteins. Breast Cancer 2 (AQUA). 92 breast cancer patients, 16 proteins. Breast Cancer 3 (IHC, 5 levels). 122 breast cancer patients, 4 proteins. Breast Cancer 3 (IHC quickscore). 122 breast cancer patients, 4 proteins. Want to try the upload facility? You can also download example data. Button in the top right of the page to get started. Click the im...
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TMA Navigator
Welcome to TMA Navigator, a suite of tools developed specifically for tissue microarray data. It is a free web-based service open to all users, and there is no login requirement. Middot; Contact us. Middot; Citing TMA Navigator. Use of this website implies acceptance of the terms of use. And privacy and cookie policies. Please select a file containing marker scores. Be sure to check the file formatting requirements.
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