cagef.utoronto.ca
Genomics | CAGEF Centre for the Analysis of Genome Evolution & Function
http://www.cagef.utoronto.ca/services/next-generation-genomics
We provide both Next Generation Sequencing with the Illumina system and high throughput Sanger sequencing with the 48 capillary AB system. Along with standard sequencing, we also perform CAGEF-developed techniques:. Identifies the causative lesion in Arabidopsis EMS generated mutants. Provides highly informative concatenated short sequence reads of variable regions of the 16S rRNA gene for microbiome research. Illumina NextSeq500 Desktop Sequencer v2. Illumina MiSeq Personal Sequencer v2.
cagef.utoronto.ca
Transcriptomics | CAGEF Centre for the Analysis of Genome Evolution & Function
http://www.cagef.utoronto.ca/services/transcriptomics
Our transcriptomics platform consists of both traditional microarray and Illumina RNA-Seq services. Affymetrix GeneChip Transcriptome Profiling System. GeneChips currently available in house:. Arabidopsis genome tiling array 1.0R. Can also interrogate user provided:. Genome tiling arrays for ChIP-chip studies. Custom arrays designed for resequencing. Illumina Solexa Genome Analyzer IIx with Paired End capabilities. Next generation high-throughput genome analyzer can be applied to:. Thakur S, Guttman DS.
cagef.utoronto.ca
Quantitative Interactor Screening with next-generation Sequencing (QIS-Seq) identifies Arabidopsis thaliana MLO2 as a target of the Pseudomonas syringae type III effector HopZ2 | CAGEF Centre for the Analysis of Genome Evolution & Function
http://www.cagef.utoronto.ca/quantitative-interactor-screening-with-next-generation-sequencing-qis-seq-identifies-arabidopsis-thaliana-mlo2-as-a-target-of-the-pseudomonas-syringae-type-iii-effector-hopz2-2
Quantitative Interactor Screening with next-generation Sequencing (QIS-Seq) identifies Arabidopsis thaliana MLO2 as a target of the Pseudomonas syringae type III effector HopZ2. Quantitative Interactor Screening with next-generation Sequencing (QIS-Seq) identifies Arabidopsis thaliana MLO2 as a target of the Pseudomonas syringae type III effector HopZ2. Lewis JD, Wan J, Ford R, Gong Y, Fung P, Nahal H, Wang PW, Desveaux D, Guttman DS. BMC Genomics 2012 ;13():8. Thakur S, Guttman DS. The auxin response fa...
cagef.utoronto.ca
Services | CAGEF Centre for the Analysis of Genome Evolution & Function
http://www.cagef.utoronto.ca/services
CAGEF maintains a variety of state-of-the-art equipment allowing us to provide a range of services for your research needs. All services include an initial consultation and help with study design. A De-Novo Genome Analysis Pipeline (DeNoGAP) for large-scale comparative prokaryotic genomics studies. Thakur S, Guttman DS. Genomic screens identify a new phytobacterial microbe-associated molecular pattern and the cognate Arabidopsis receptor-like kinase that mediates its immune elicitation.
cagef.utoronto.ca
Next-generation mapping of Arabidopsis genes | CAGEF Centre for the Analysis of Genome Evolution & Function
http://www.cagef.utoronto.ca/next-generation-mapping-of-arabidopsis-genes
Next-generation mapping of Arabidopsis genes. Next-generation mapping of Arabidopsis genes. Austin RS, Vidaurre D, Stamatiou G, Breit R, Provart NJ, Bonetta D, Zhang J, Fung P, Gong Y, Wang PW, McCourt P, Guttman DS. Plant J. 2011 Aug;67(4):715-25. Population. This method, called Next Generation Mapping (NGM), uses a chastity statistic to quantify the relative contribution of the parental mutant and mapping lines to each SNP in the pooled F? Lines and a single channel of Illumina Genome Analyzer data....
davidechicco.wordpress.com
Contacts | DavideChicco.it
https://davidechicco.wordpress.com/contatti
Machine learning and bioinformatics at the Princess Margaret Cancer Centre, University of Toronto. Mail: davide.chicco(AT)gmail.com. Phone: 1.416.634.87.36. Skype id: davide chicco. Princess Margaret Cancer Centre. Toronto Medical Discovery Tower 11-401. One thought on “ Contacts. Oh , I also will sent you a skype request for the possibility to communicate The request would be from Skype name : arseniy.chernykh (Irvine). Leave a Reply Cancel reply. Enter your comment here. Address never made public).
davidechicco.wordpress.com
Support our running team at OneWalk.ca! | DavideChicco.it
https://davidechicco.wordpress.com/2015/06/29/support-our-running-team-at-onewalk-ca
Machine learning and bioinformatics at the Princess Margaret Cancer Centre, University of Toronto. Support our running team at OneWalk.ca! Our research group will have a team at OneWalk.ca run, an important event to collect money for cancer scientific research. The run will happen on Sunday 12th September 2015, and we’re collecting money for our goal. You’re invited to make a donation and/or to participate to the run. Princess Margaret Cancer Foundation. New journal paper published on BMC Bioinformatics.
davidechicco.wordpress.com
Software | DavideChicco.it
https://davidechicco.wordpress.com/software
Machine learning and bioinformatics at the Princess Margaret Cancer Centre, University of Toronto. I developed some of the functionalities of Bio-SeCo, a bioinformatics Search Computing platform. Able to answer to complex multi-domain biological questions and provide ranked results. You can access to Search Computing by clicking on the following image. To cite Bio-SeCo in your papers:. D Chicco, M. Masseroli,. 8220;Software suite for gene and protein annotation prediction and similarity search”. Permissi...
davidechicco.wordpress.com
Great readings | DavideChicco.it
https://davidechicco.wordpress.com/other-stuff
Machine learning and bioinformatics at the Princess Margaret Cancer Centre, University of Toronto. Here’s some very interesting stuff I suggest you to read. It’s about doin’ scientific research, runnin’ experiments, and takin’ the initiative:. 8220;You and your research”. By Richard Hamming (1986). 8220;Cargo cult science”. By Richard Feynman (1974). 8220;Ma le formiche non crescono”. Di Francesco Daveri (2010). 8220;Rules for academic managers”. By Chih-Jen Lin (2006). Leave a Reply Cancel reply. Projec...
vanbug.org
Vancouver Bioinformatics User Group (VanBUG) » Sponsorship
http://www.vanbug.org/sponsorship
VanBUG is possible through the work of volunteers, however we welcome support in order to bring in outside speakers and host other significant events. If you’re interested in sponsoring an event (a night, a term, or a year) please contact us at dev@vanbug.org. VanBUG welcomes bioinformatics-related companies to present short (maximum 10 minutes) presentations before VanBUG meetings. To discuss this with the VanBUG team, please contact us at: dev@vanbug.org. And has previously been supported by:.
