geneontology.org
Guide to GO Evidence Codes | Gene Ontology Consortium
http://geneontology.org/GO.evidence.shtml
Skip to main content. Annotation Tools, Downloads, and Beyond. Guide to GO Evidence Codes. This document is a guide to the standard usage of the GO evidence codes. Annotators may also find the evidence code decision tree. Useful in selecting the correct evidence code for an annotation. Use of an experimental evidence code in a GO annotation indicates that the cited paper displayed results from a physical characterization of a gene or gene product that has supported the association of a GO term. The.
geneontology.org
GO Slim and Subset Guide | Gene Ontology Consortium
http://geneontology.org/GO.slims.shtml
Skip to main content. Annotation Tools, Downloads, and Beyond. GO Slim and Subset Guide. What is a GO slim? Map2Slim option in OWLTools. What is a GO slim? GO slims are cut-down versions of the GO ontologies containing a subset of the terms in the whole GO. They give a broad overview of the ontology content without the detail of the specific fine grained terms. Maintained GO slims for download. Generic GO slim Developed by GO Consortium. Plant slim Developed by The Arabidopsis Information Resource. That ...
geneontology.org
Books | Gene Ontology Consortium
http://geneontology.org/GO.format.shtml
Skip to main content. Annotation Tools, Downloads, and Beyond. GO Annotation File Formats. Guide to GO Evidence Codes. The Reference Genome Annotation Project. Member of the Open Biological and Biomedical Ontologies. The Gene Ontology Consortium is supported by a P41 grant from the National Human Genome Research Institute (NHGRI) [grant 5U41HG002273-14. For the full list.
geneontology.org
Other Useful Links | Gene Ontology Consortium
http://geneontology.org/page/other-useful-links
Skip to main content. Annotation Tools, Downloads, and Beyond. Useful links for the SourceForge site, including both general and GO-specific pages. Help page for those who wish to access the anonymous GO CVS repository. A set of guides for curators editing the ontologies. Annotation Tools, Downloads, and Beyond. Member of the Open Biological and Biomedical Ontologies. The Gene Ontology Consortium is supported by a P41 grant from the National Human Genome Research Institute (NHGRI) [grant 5U41HG002273-14.
geneontology.org
Bioinformatician | Gene Ontology Consortium
http://geneontology.org/user-story-tags/bioinformatician
Skip to main content. Annotation Tools, Downloads, and Beyond. These are pages that are intended to be used by bioinformaticians. GO Annotation File (GAF) Format 2.1. Annotation data is submitted to the GO Consortium in the form of gene association files, or GAFs. This guide lays out the format specifications for GAF 2.1; for the previous GAF 2.0 file syntax, please see the GAF 2.0 file format guide. For the first GAF 1.0 file syntax, please see the GAF 1.0 file format guide. Read more about TermGenie.
geneontology.org
GO Database | Gene Ontology Consortium
http://geneontology.org/page/go-database
Skip to main content. Annotation Tools, Downloads, and Beyond. The GO database is a relational database. Comprised of the GO ontologies as well as the annotations of genes and gene products to terms in the those ontologies. Housing both the ontologies and the annotations in a single database allows powerful queries of the annotations using the ontology. The GO database is the source of all data available through the legacy AmiGO 1.8 browser and search engine. The GO database is maintained as a MySQL.
geneontology.org
Domain specialist | Gene Ontology Consortium
http://geneontology.org/user-story-tags/domain-specialist
Skip to main content. Annotation Tools, Downloads, and Beyond. These are pages that are intended to be used by domain specialists. SynGO - Synapse Biology. The Synapse Gene Ontology and Annotation Initiative (SynGO) aims to:. Improve the Gene Ontology to accurately describe cellular components (CC) and biological processes (BP) important for synapse biology. Provide expert curated annotations of pre- and postsynaptic genes using the improved Gene Ontology classes. Read more about SynGO - Synapse Biology.
geneontology.org
Biological Process Ontology Guidelines | Gene Ontology Consortium
http://geneontology.org/GO.process.guidelines.shtml
Skip to main content. Annotation Tools, Downloads, and Beyond. Biological Process Ontology Guidelines. Biological Process Ontology Guidelines. A biological process is a recognized series of events or molecular functions. A process is a collection of molecular events with a defined beginning and end. Mutant phenotypes often reflect disruptions in biological processes. Every process should have a discrete beginning and end, and these should be clearly stated in the process term definition. Is a or part of.
geneontology.org
GO Citation Policy | Gene Ontology Consortium
http://geneontology.org/GO.cite.shtml
Skip to main content. Annotation Tools, Downloads, and Beyond. To reference the Gene Ontology project and the foundational thought process that went into its birth, please cite:. Ashburner et al. Gene ontology: tool for the unification of biology (2000). 25-9 Online at Nature Genetics. Also, please cite the use our resources as:. The Gene Ontology Consortium. Gene Ontology Consortium: going forward. (2015). Database issue D1049 D1056. Online at Nucleic Acids Research. To cite AmiGO, the GO Consortium's a...
