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Shmulevich Group Software Tools

Shmulevich Group, Institute for Systems Biology. Dizzy: a chemical kinetics stochastic simulation software package written in Java. ISBJava: a Java library for computational biology. BioTapestry: network visualization, documentation, and dissemination. BioTapestry is developed in collaboration with the laboratory of Eric Davidson at Caltech. Pointillist: an iterative framework for biological modeling. Please e-mail comments or corrections regarding this document to:. Last update: 17th August 2007.

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Shmulevich Group Software Tools | xerad.systemsbiology.net Reviews
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Shmulevich Group, Institute for Systems Biology. Dizzy: a chemical kinetics stochastic simulation software package written in Java. ISBJava: a Java library for computational biology. BioTapestry: network visualization, documentation, and dissemination. BioTapestry is developed in collaboration with the laboratory of Eric Davidson at Caltech. Pointillist: an iterative framework for biological modeling. Please e-mail comments or corrections regarding this document to:. Last update: 17th August 2007.
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Shmulevich Group Software Tools | xerad.systemsbiology.net Reviews

https://xerad.systemsbiology.net

Shmulevich Group, Institute for Systems Biology. Dizzy: a chemical kinetics stochastic simulation software package written in Java. ISBJava: a Java library for computational biology. BioTapestry: network visualization, documentation, and dissemination. BioTapestry is developed in collaboration with the laboratory of Eric Davidson at Caltech. Pointillist: an iterative framework for biological modeling. Please e-mail comments or corrections regarding this document to:. Last update: 17th August 2007.

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1

MotifMogul Web Server

http://xerad.systemsbiology.net/MotifMogulServer

This is a web server that enables the analysis of multiple DNA sequences using sets of Position Weight Matrices from the JASPAR. Databases, using multiple scanning algorithms. (The use of the TRANSFAC matrices for analyses is free for users from non-profit organizations only. Commercial users have to license the TRANSFAC database [Disclaimer]. Help on using this server can be found by clicking on the linked features within the page and using the FAQ. Upload sequence(s) in Fasta. To submit information, or.

2

Shmulevich Group Software Tools

http://xerad.systemsbiology.net/index.html

Shmulevich Group, Institute for Systems Biology. Dizzy: a chemical kinetics stochastic simulation software package written in Java. ISBJava: a Java library for computational biology. BioTapestry: network visualization, documentation, and dissemination. BioTapestry is developed in collaboration with the laboratory of Eric Davidson at Caltech. Pointillist: an iterative framework for biological modeling. Please e-mail comments or corrections regarding this document to:. Last update: 17th August 2007.

3

Mogul Homepage

http://xerad.systemsbiology.net/Mogul

Institute for Systems Biology. Mogul is a software tool that integrates multiple transcription factor binding site prediction algorithms into a common framework. Mogul provides access to a number of the most widely-used and popular predictions algorithms, organising them based on the predcitions that they make:. These algorithms analysze intergenic sequences using matrices dervied from experimentally verified transcription factor binding sites. Mogul is configured to perform analyses on a number of organ...

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Shmulevich Group, Institute for Systems Biology. Dizzy: a chemical kinetics stochastic simulation software package written in Java. ISBJava: a Java library for computational biology. BioTapestry: network visualization, documentation, and dissemination. BioTapestry is developed in collaboration with the laboratory of Eric Davidson at Caltech. Pointillist: an iterative framework for biological modeling. Please e-mail comments or corrections regarding this document to:. Last update: 17th August 2007.

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