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Taro L. Saito. 2014-03-23 Updated blog site: http:/ xerial.org/blog. This site is maintained by Taro L. Saito.

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Top Page | xerial.org | xerial.org Reviews

https://xerial.org

Taro L. Saito. 2014-03-23 Updated blog site: http:/ xerial.org/blog. This site is maintained by Taro L. Saito.

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voice.xerial.org voice.xerial.org

Xerial Blog

Voice of an Xerial developer. Monday, February 9, 2009. Pondering Bug Tracking Systems. As a programmer, I have many things to hack, but unfortunately I am not smart enough to remember everything to code after I slept. In the next morning, I usually forget some features to code. Bug Tracking System ( BTS. 160;to keep remembering these tasks.   Joel  Spolsky. 160;also  wrote an article about Bug Tracking Systems. I am using Bug Tracking Systems, such as  Bugzilla. 160;Gears installed on your browser, you ...

INTERNAL PAGES

xerial.org xerial.org
1

Taro L. Saito, Ph.D. | xerial.org

http://xerial.org/leo

Taro L. Saito. Taro L. Saito, Ph.D. Software Engineer at Treasure Data, Inc. Language Skills: Scala (current favorite), Java, C/C , Ruby, Perl, R, Scheme, OCaml, Z80, etc. GitHub https:/ github.com/xerial. BitBucket https:/ bitbucket.org/xerial. Tutorial of the Scala programming language. Presentation Slides @ SlideShare. Leo's Chronicle (in Japanese): http:/ leoclock.blogspot.com. Xerial Blog: http:/ voice.xerial.org. April 2005 - March 2007. April 2007 - February 2014. March 2014 - June 2015. MachiBase...

2

Xerial Blog

http://xerial.org/blog

Visualizing Project Dependencies in Sbt. For pretty printing dependencies in sbt, use sbt-dependency-graph plugin. To use this plugin, add sbt plugin settings:. Read on →. Buidling Multi-module Projects With Sbt. In the previous post. I introduced how to use. For building Java projects. In response to this article my colleagues in Treasure Data. Asked me on how to build multi-module projects with sbt. So, today I will talk about this topic. Read on →. Building Java Projects With Sbt. Read on →.

3

Genome Sciences | xerial.org

http://xerial.org/genome-science

Taro L. Saito. Cluser Computing Platform for Genome Sciences. Personal genome analysis involves massive amount of data analysis: genome sequence alignment, SNP calls, finding desease-related mutations, etc. These data analysis involves tons of data managment (e.g., compression, file I/O, table joins, filtering, etc.) Silk supports running these complex data analysis pipeline in a cluster machine. Genome browsers developed by UTGB. The Primary Transcriptome of. This is due to the high frequency of trans-s...

4

Publications | xerial.org

http://xerial.org/publication

Taro L. Saito. Taro L. Saito. Toshiya Nishimura, Amaury Herpin, Tetsuaki Kimura, Ikuyo Hara, Toshihiro Kawasaki, Shuhei Nakamura, Yasuhiro Yamamoto, Taro L. Saito. Jun Yoshimura, Shinichi Morishita, Tatsuya Tsukahara, Satoru Kobayashi, Kiyoshi Naruse, Shuji Shigenobu, Noriyoshi Sakai, Manfred Schartl, and Minoru Tanaka. Analysis of a novel gene, Sdgc, reveals sex chromosome-dependent differences of medaka germ cells prior to gonad formation. July 30, 2014, doi:10.1242/dev.106864. Taro L. Saito. Matthias ...

5

Scala Cookbook

http://xerial.org/scala-cookbook

Scala Cookbook Tutorial of the Scala Programming Language. Scala Cookbook http:/ xerial.org/scala-cookbook. アルゴリズムとデータの鎹 かすがい design pattern. 0 until 100 - 数字の範囲を指定する. Map, flatMapのsyntax sugar. DNAクラスでA, C, G, T, Nを表現. By Taro L. Saito. Is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported License.

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voice.xerial.org voice.xerial.org

Xerial Blog: About Me

http://voice.xerial.org/2008/03/about-me.html

Voice of an Xerial developer. Monday, March 17, 2008. Taro L. Saito. An architect of Xerial (XML DBMS) http:/ www.xerial.org/. Twitter   http:/ twitter.com/taroleo. Posted by Taro L. Saito (leo). Subscribe to: Post Comments (Atom). Leo's Chronicle (Blog in Japanese). Official Blog for Xerial Project. Xerial Blog by  Taro L. Saito. 160;is licensed under a  Creative Commons Attribution-Noncommercial-Share Alike 2.1 Japan License.

voice.xerial.org voice.xerial.org

Xerial Blog: November 2008

http://voice.xerial.org/2008_11_01_archive.html

Voice of an Xerial developer. Thursday, November 20, 2008. SQLite JDBC version 3.6.6. Today, I released sqlite-jdbc-3.6.6, an upgrade release from the previous version (sqlite-jdbc-3.6.4). Http:/ www.xerial.org/trac/Xerial/wiki/SQLiteJDBC. This release will be synchronized with Maven's central repository. Within a few days. Posted by Taro L. Saito (leo). Links to this post. Monday, November 17, 2008. Comparison between SQLite and H2 Databases. I found some article. Is slower than other DBMS. Driver has s...

voice.xerial.org voice.xerial.org

Xerial Blog: [Announce] Site Maintenance

http://voice.xerial.org/2008/11/announce-site-maintenance.html

Voice of an Xerial developer. Friday, November 7, 2008. Because of a planned power cut in our server room, xerial.org site will be down for a few days from November 7th, 2008. . Posted by Taro L. Saito (leo). Subscribe to: Post Comments (Atom). Leo's Chronicle (Blog in Japanese). SQLite JDBC version 3.6.6. Comparison between SQLite and H2 Databases. Prime Minister Now Scattering Money. Japanese Language on the Verge of Demise. Xerial Blog by  Taro L. Saito.

voice.xerial.org voice.xerial.org

Xerial Blog: Prime Minister Now Scattering Money

http://voice.xerial.org/2008/11/prime-minister-now-scattering-money.html

Voice of an Xerial developer. Wednesday, November 12, 2008. Prime Minister Now Scattering Money. Japan's Prime Minister Aso. Pronounced as uh-so, not ei. So) are going to distribute tax payers' money to themselves again. Sound strange? But that topic is quite hot every morning in every news channel  in Japan. It seems that every people will get a pay back about 12,000 -20,000 yen, in total the budgets will be 2 trillion yen. This kind of money scattering is called baramaki. What a reaction should we take?

voice.xerial.org voice.xerial.org

Xerial Blog: Japanese Language on the Verge of Demise

http://voice.xerial.org/2008/11/japanese-language-on-verge-of-demise.html

Voice of an Xerial developer. Tuesday, November 11, 2008. Japanese Language on the Verge of Demise. Recently, many japanese people are talking about a book titled '日本語が亡びるとき'. Its English might be 'Japanese Language on the Verge of Demise' or 'Japanese Language in Crisis'. . Anyway, it shows our fear that English cannot be a true. Posted by Taro L. Saito (leo). Subscribe to: Post Comments (Atom). Leo's Chronicle (Blog in Japanese). SQLite JDBC version 3.6.6. Comparison between SQLite and H2 Databases.

voice.xerial.org voice.xerial.org

Xerial Blog: February 2009

http://voice.xerial.org/2009_02_01_archive.html

Voice of an Xerial developer. Monday, February 9, 2009. Pondering Bug Tracking Systems. As a programmer, I have many things to hack, but unfortunately I am not smart enough to remember everything to code after I slept. In the next morning, I usually forget some features to code. Bug Tracking System ( BTS. 160;to keep remembering these tasks.   Joel  Spolsky. 160;also  wrote an article about Bug Tracking Systems. I am using Bug Tracking Systems, such as  Bugzilla. 160;Gears installed on your browser, you ...

utgenome.org utgenome.org

UTGB Toolkit - Users Manual

http://utgenome.org/toolkit

UTGB Toolkit User's Manual. This page describes the usage of UTGB Toolkit. Drag and drop of tracks is supported in UTGB, and also you can resize the height of tracks by dragging the lower frame border of the tracks. Opens the configuration panel for the track. Adjusts the height of the track. Resizes the track frame height according to the track image size. Minimizes/Restore the height of the track frame. The following keyboard shortcuts are provided for relocating the window location quickly:. These doc...

utgenome.org utgenome.org

UTGB Toolkit -

http://utgenome.org/publication.html

UTGB Toolkit for Personalized Genome Browsers. Taro L. Saito, Jun Yoshimura, Shin Sasaki, Budrul Ahsan, Atsushi Sasaki, Reginaldo Kuroshu and Shinichi Morishita. Bioinformatics. In press) (June 2009). Chromatin-Associated Periodicity in Genetic Variation Downstream of Transcriptional Start Sites. MachiBase: A Drosophila Melanogaster 5'-end mRNA Transcription Database. ACM Portal http:/ doi.acm.org/10.1145/1376616.1376650. UTGB Medaka: Genomic Resource Database for Medaka Biology.

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