yeast.gi.k.u-tokyo.ac.jp

SCMD Saccharomyces Cerevisiae Morphological Database

Teardrop View of ORF Parameters. Teardrop View of Average Shapes Grouped by. Is a collection of micrographs of budding yeast mutants. Micorgraphs of mutants with altered cell morphology were taken at Ohya Group. From a set of the haploid MATa deleted strains obtained from EUROSCARF. From the micrographs, disruptant cells are automatically extracted by our novel cell-image processing software developed at Morishita Group. Scerevisiae, yeast, bioinformatics, data mining.

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SCMD Saccharomyces Cerevisiae Morphological Database | yeast.gi.k.u-tokyo.ac.jp Reviews

<META> DESCRIPTION

Teardrop View of ORF Parameters. Teardrop View of Average Shapes Grouped by. Is a collection of micrographs of budding yeast mutants. Micorgraphs of mutants with altered cell morphology were taken at Ohya Group. From a set of the haploid MATa deleted strains obtained from EUROSCARF. From the micrographs, disruptant cells are automatically extracted by our novel cell-image processing software developed at Morishita Group. Scerevisiae, yeast, bioinformatics, data mining.

<META> KEYWORDS

1 mutant list

2 parameter help

3 photo

4 photo viewer

5 individual cell datasheet

6 cells grouped by

7 bud size

8 nucleus location

9 actin distribution

10 data mining

CONTENT

Page content here

KEYWORDS ON PAGE

mutant list,parameter help,photo,photo viewer,individual cell datasheet,cells grouped by,bud size,nucleus location,actin distribution,data mining,morphology search,orf parameter datasheet,2d plot,average shapes,download,image processing software,site map

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SCMD Saccharomyces Cerevisiae Morphological Database | yeast.gi.k.u-tokyo.ac.jp Reviews

https://yeast.gi.k.u-tokyo.ac.jp

Teardrop View of ORF Parameters. Teardrop View of Average Shapes Grouped by. Is a collection of micrographs of budding yeast mutants. Micorgraphs of mutants with altered cell morphology were taken at Ohya Group. From a set of the haploid MATa deleted strains obtained from EUROSCARF. From the micrographs, disruptant cells are automatically extracted by our novel cell-image processing software developed at Morishita Group. Scerevisiae, yeast, bioinformatics, data mining.

INTERNAL PAGES

yeast.gi.k.u-tokyo.ac.jp

1

SCMD Saccharomyces Cerevisiae Morphological Database

http://yeast.gi.k.u-tokyo.ac.jp/datamine/;jsessionid=958A21C49B7127A140DEDAF3DECC9AD9

Teardrop View of ORF Parameters. Teardrop View of Average Shapes Grouped by. Is a collection of micrographs of budding yeast mutants. Micorgraphs of mutants with altered cell morphology were taken at Ohya Group. From a set of the haploid MATa deleted strains obtained from EUROSCARF. From the micrographs, disruptant cells are automatically extracted by our novel cell-image processing software developed at Morishita Group. Scerevisiae, yeast, bioinformatics, data mining.

2

SCMD Error Page

http://yeast.gi.k.u-tokyo.ac.jp/datamine/ViewORFParameter.do;jsessionid=958A21C49B7127A140DEDAF3DECC9AD9

Teardrop View of ORF Parameters. Teardrop View of Average Shapes Grouped by. No ORF parameter is selected. Please select some ORF parameters in the My Parameter List.

3

SCMD Your Selection

http://yeast.gi.k.u-tokyo.ac.jp/datamine/ViewSelection.do;jsessionid=958A21C49B7127A140DEDAF3DECC9AD9

Teardrop View of ORF Parameters. Teardrop View of Average Shapes Grouped by. Display 2D plot of these mutants. Ex yor202w, yal002w, rad51, .). Save the above list of ORFs as an XML file :. Load an ORF list from an XML file :.

4

SCMD About SCMD

http://yeast.gi.k.u-tokyo.ac.jp/datamine/about.jsp;jsessionid=958A21C49B7127A140DEDAF3DECC9AD9

Teardrop View of ORF Parameters. Teardrop View of Average Shapes Grouped by. When users publish the analysis of individual genes using the data of this site, they should include the acknowledgement "The SCMD database has been provided freely by the University of Tokyo for use in this publication/correspondence only.". Finally, we are continuing to improve the SCMD database; therefore, any feedback information from the users should be highly welcomed. Ohya Laboratory ( homepage. Taro L. Saito. Miwaka Ohta...

5

SCMD Site Map

http://yeast.gi.k.u-tokyo.ac.jp/datamine/sitemap.jsp;jsessionid=958A21C49B7127A140DEDAF3DECC9AD9

Teardrop View of ORF Parameters. Teardrop View of Average Shapes Grouped by. You can select all menus described below from the above drop-down menu bar. Display a list of yeast mutants available in SCMD. Display micrographs of yeast mutants stained with ConA, DAPI and Rh-Ph. Show individual cells and their morphological prameters (cell parameters) in the micrographs. Cells Grouped by bud size. Show cells grouped by morphological conditions such as bud size, nucleus location and action distributions.

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ps.k.u-tokyo.ac.jp

東京大学大学院新領域創成科学研究科先端生命科学専攻生命応答システム分野

http://ps.k.u-tokyo.ac.jp/outline.html

High-dimensional and large-scale phenotyping of yeast mutants. Proc Natl Acad Sci U S A. 2005 Dec 27;102(52):19015-20. Epub 2005 Dec 19. Data Mining Tools for Saccharomyces Cerevisiae. Saito, T., Sese, J., Nakatani, Y., Sano F., Yukawa, M., Ohya, Y., and Morishita S. 2005 Jul 1;33(Web Server issue):W753-7. Genetic complexity and QTL mapping of yeast morphological traits. Nogami S, Ohya Y, Yvert G. 2007 Feb 23;3(2):e31. Induced morphology revealed by morphological phenotyping of Ca. Regions required for n...

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SCMD Saccharomyces Cerevisiae Morphological Database

Teardrop View of ORF Parameters. Teardrop View of Average Shapes Grouped by. Is a collection of micrographs of budding yeast mutants. Micorgraphs of mutants with altered cell morphology were taken at Ohya Group. From a set of the haploid MATa deleted strains obtained from EUROSCARF. From the micrographs, disruptant cells are automatically extracted by our novel cell-image processing software developed at Morishita Group. Scerevisiae, yeast, bioinformatics, data mining.

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