bioinformatictools.blogspot.com
Bioinformatics Tools: In-silico characterization of proteins
http://bioinformatictools.blogspot.com/2011/11/in-silico-characterization-of-proteins.html
Bioinformatics has evolved as a great tool for molecular biologists. There are various tools available for helping in reducing the time required to analyze biological materials be it DNA, RNA, Proteins etc. I wish to list here few of the commonly used tools. Please send me suggestions to improve the content. If you like or dislike something, let me know, your inputs matters. contact me: drsanjivk[at]gmail[dot]com. Saturday, November 5, 2011. In-silico characterization of proteins. Different combinations ...
baadergen677s09.weebly.com
Protein domains - SMN1 - Spinal Muscular Atrophy
http://baadergen677s09.weebly.com/protein-domains.html
SMN1 - Spinal Muscular Atrophy. This web page was produced as an assignment for Genetics 677, an undergraduate course at UW-Madison. Both identify the tudor domain as occuring in all homologs of the SMN1 gene. The Tudor domain is a domain of around 50-70 amino acids which was first identified as a repeat present in 10 copies in Drosophila Tudor protein [ 1. A OTU domain (see PDOC50802. A KH domain (see PDOC50084. A DEAD/DEAH box helicase domain (see PDOC00039. Published articles about the Tudor domain:.
trittgen677s09.weebly.com
Gene Sequence... etc - FOXP2: The Root of Human Language
http://trittgen677s09.weebly.com/gene-sequence-etc.html
FOXP2: The Root of Human Language. News vs. Science. Gene Sequence. etc. This web page was produced as an assignment for Genetics 677, an undergraduate course at UW-Madison. Also known as SPCH1, CAGH44, TNRC10, and DKFZp686H1726. Is found on chromosome 7 in humans and has three known isoforms (5). The sequences for these isoforms and their respective transcript variants can be found at NCBI via the following links:. Further analysis of this gene will use. Danio rerio DQ061052.1. Foxp2 aa alignment.pdf.
digtop.de
From Disease Genes to Protein Pathways :: DiGtoP
http://www.digtop.de/tools/links.php
PANTHER - Protein Analysis Through Evolutionary Relationships. HPRD - Human Protein Reference Database. HUPO - Human Proteome Organisation. PIR - Protein Information Ressource. PSI - Protein Structure Initiative. DIP - Database of Interacting Proteins. MIPS Protein-Protein Interaction Database. SCOPPI - Structural Classification of Protein-Protein Interfaces. STITCH - Chemical-Protein Interactions. Phospho.ELM - Curated Database of Phosphorylation Sites. ELM - Database of Regulatory Motifs.
magi.brown.edu
MAGI
http://magi.brown.edu/acknowledgements
MAGI was created by the Raphael research group. MAGI is supported by Brown University, the National Science Foundation and National Institutes of Health. MAGI uses public mutation data from The Cancer Genome Atlas's Pan-Cancer and stomach cancer projects [1-2],. Interaction networks [3-6],. Protein domain databases [7-10]. MAGI also uses annotations from the Database of Curated Mutations. Wildstein, J. et al. 2013) The Cancer Genome Atlas Pan-Cancer analysis project. Nat. Genet. 45, 1113 1120. Letunic, I...
vanvreedegen564s14.weebly.com
Protein Interactions - Juvenile Myoclonic Epilepsy the EFHC1 gene
http://vanvreedegen564s14.weebly.com/protein-interactions.html
This page was created for University of Wisconsin Genetics 564. Chemical Genetics and RNAi. This page was created for University of Wisconsin undergraduate course Genetics 564. What are protein interaction networks? Protein interaction networks are displays of the other proteins within the cell that specifically interact with a protein of interest. These networks come from databases of scientific researching noting each interaction partner found within many model organisms, such as String.
elm.eu.org
ELM - Help
http://elm.eu.org/help.html
The Eukaryotic Linear Motif resource for. Functional Sites in Proteins. What methods are used for detecting functional sites? Currently, patterns written as regular expressions. Why are the ELM predictions not scored? Since a regular expression either matches or does not match a string (or a protein subsequence), in its nature the score would be 1 or 0. What does the ELM instance mapper do? Uses PHI-BLAST to map ELM predictions of a query sequence to known annotated ELM instances. The basis for the m...
elm.eu.org
ELM - Help
http://elm.eu.org/infos/help.html
The Eukaryotic Linear Motif resource for. Functional Sites in Proteins. What methods are used for detecting functional sites? Currently, patterns written as regular expressions. Why are the ELM predictions not scored? Since a regular expression either matches or does not match a string (or a protein subsequence), in its nature the score would be 1 or 0. What does the ELM instance mapper do? Uses PHI-BLAST to map ELM predictions of a query sequence to known annotated ELM instances. The basis for the m...
boukahilgen677s10.weebly.com
Protein Domains - Parkinson's Disease and the Parkin gene
http://boukahilgen677s10.weebly.com/protein-domains.html
Parkinson's Disease and the Parkin gene. Popular Press vs Scientific Review. Gene sequence and homology. This web page was produced as an assignment for Genetics 677. An undergraduate course at UW-Madison. The human parkin protein (accession number: NP 004553.2) is 465 amino acids in length (click. To view sequence). Using the SMART. Program, three domains were found to be in the protein sequence of parkin (1):. 1 A ubiquitin homolog (UBQ) ranging from 1-72 aa (E value = 2.95e-16). There are 5 isoforms o...
