bioboxes.org
BioboxesA standard for creating interchangable bioinformatics software containers.
http://www.bioboxes.org/
A standard for creating interchangable bioinformatics software containers.
http://www.bioboxes.org/
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Bioboxes | bioboxes.org Reviews
https://bioboxes.org
A standard for creating interchangable bioinformatics software containers.
Notes: Bio in Docker Symposium 2015 day 1: ngs pipelines, workflow tools, volume management | Small Change Bioinformatics
https://smallchangebio.wordpress.com/2015/11/09/bioindocker2015-day1
Notes: Bioinformatics Open Source Conference 2015 day 2 afternoon: Translational, Visualization and Lightning Talks. Notes: Bio in Docker Symposium 2015 day 2: Docker infrastructure and hackathon →. November 9, 2015. Notes: Bio in Docker Symposium 2015 day 1: ngs pipelines, workflow tools, volume management. I’m at the Bio in Docker Symposium. At the Wellcome Collection. In London. This is a great 2 day set of talks and coding sessions around the use of Docker containerization. Which the community can it...
Notes: Bioinformatics Open Source Conference 2015 day 2 morning — Ewan Birney, Open Science and Reproducibility | Small Change Bioinformatics
https://smallchangebio.wordpress.com/2015/07/11/notes-bioinformatics-open-source-conference-2015-day-2-morning-ewan-birney-open-science-and-reproducibility
Notes: Bioinformatics Open Source Conference 2015 day 1 afternoon — Standards, Interoperability and Diversity Panel. Notes: Bioinformatics Open Source Conference 2015 day 2 afternoon: Translational, Visualization and Lightning Talks →. July 11, 2015. Notes: Bioinformatics Open Source Conference 2015 day 2 morning — Ewan Birney, Open Science and Reproducibility. I’m at the 2015 Bioinformatics Open Source Conference (BOSC). My other notes from the conference:. Holly Bik and Data Science. Ewan starts by rem...
MMETSP re-assemblies | Lisa Johnson Cohen
https://monsterbashseq.wordpress.com/2016/09/13/mmetsp-re-assemblies
Notes on PhD research learning R, Python and Linux for bioinformatics and genomic-scale data analyses. Adventures with ONT MinION at MBL’s Microbial Diversity Course. DIB Lab Retreat to Yosemite, February 2017 →. September 13, 2016. Update (9/27/2016): 719 assemblies now available at the links below. All FINISHED! Update (9/22/2016): 715 assemblies now available at the links below. I have *almost* finished re-assembling. At UC Davis. The lab has developed the Eel pond khmer protocol. Let us know if you h...
November | 2015 | Small Change Bioinformatics
https://smallchangebio.wordpress.com/2015/11
Monthly Archives: November 2015. November 10, 2015. Notes: Bio in Docker Symposium 2015 day 2: Docker infrastructure and hackathon. I’m at day 2 of the Bio in Docker Symposium. At the Wellcome Collection. In London. This is a great 2 day set of talks and coding sessions around the use of Docker containerization. Notes for day 1. NGS pipelines, workflow tools and data volume management. F1000Research – a publishing platform for the Docker community. Thomas Ingraham and Michael Markie. Allows defining and ...
Frequently Asked Questions — ngless 0.0 documentation
http://ngless.readthedocs.io/en/latest/faq.html
Taxonomic profiling using mOTUs with ngless. Why a new domain-specific language instead of a library in Python (or another existing language)? Is the language extensible? Couldn’t you just use Docker/Bioboxes? What is the relationship of ngless to the Common Workflow Language? Questions about the ngless language. Can I pass command line arguments to a script? What are symbols (in the ngless language)? Why a new domain-specific language instead of a library in Python (or another existing language)? By con...
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BioBox
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