ccgd-starrlab.oit.umn.edu
Download the Candidate Cancer Gene Database (CCGD)
http://ccgd-starrlab.oit.umn.edu/download.php
Candidate Cancer Gene Database. To download the entire Candidate Cancer Gene Database. Click here. For an explanation of fields in this database and here. For an explanation of study interpretation for this database.
ccgd-starrlab.oit.umn.edu
Tutorial for the Candidate Cancer Gene Database (CCGD)
http://ccgd-starrlab.oit.umn.edu/tutorial.php
Candidate Cancer Gene Database. 1 Determine if a Gene of Interest is a Cancer Driver Gene. 2 Determine Cancer Driver Genes in a Cancer of Interest. 3 Determine Cancer Driver Genes in a Study of Interest. 1 Determine if a Gene of Interest is a Cancer Driver Gene. Click on the Search menu option to reach the Search page. Select “All cancers” or any specific cancers in the Cancer field. You can use Control-click (PC) or Command-click (Mac) to select multiple menu options. Select “ID” or “s...The CCGD will r...
ccgd-starrlab.oit.umn.edu
Help for the Candidate Cancer Gene Database (CCGD)
http://ccgd-starrlab.oit.umn.edu/help.php
Candidate Cancer Gene Database. See the help headings below. See the help headings below. How do I use the database? To view a brief tutorial. Do you have a bibliography of studies used in this database? To view a list of sources in PubMed. What do the fields in this database mean? How was the relative rank determined for a specific study? For a general explanation of the relative rank process. Click here. For an explanation of relative ranking for each study. See the NCBI Genome site.
previous.malacards.org
MalaCards - human disease database
http://previous.malacards.org/pages/info/id:sources
What's in a MalaCard. MalaCards is an integrated searchable database of human maladies and their annotations, modeled on the architecture and richness of the popular GeneCards. Database of human genes. And their associated genes. Each "card" contains a variety of detailed sections. For example, see our Sample Malady. What's in a MalaCard? This page provides information about the various MalaCards sections and tables. Unifying names and acronyms, and organizing characterizations. Between the disease name ...
previous.malacards.org
MalaCards - human disease database
http://previous.malacards.org/pages/info
What's in a MalaCard. MalaCards is an integrated searchable database of human maladies and their annotations, modeled on the architecture and richness of the popular GeneCards. Database of human genes. And their associated genes. Each "card" contains a variety of detailed sections. For example, see our Sample Malady. What's in a MalaCard? This page provides information about the various MalaCards sections and tables. Unifying names and acronyms, and organizing characterizations. Between the disease name ...
grch37-cancer.sanger.ac.uk
COSMIC: COSMIC Datasheets
http://grch37-cancer.sanger.ac.uk/cosmic/datasheets
Full description of new v78 content. New fully curated cancer genes;. HIF1A - 1,782 samples, 196 mutations, 56 papers. MTOR - 3,239 samples, 634 mutations, 132 papers. PTPN13 - 1,761 samples, 429 mutations, 85 papers. Curated Gene Fusions;. ETV6-RUNX1 - 2,276 samples, 357 mutations, 37 papers. Cancer Gene Census;. 9 new genes added, 1 removed. Drug Resistance; 1 new gene (FLT3) and 2 new drugs (Quizartinib and Sorafenib), 76 new unique resistance mutations curated. ICGC release 21; May 16. Hypoxia induci...
genegrid.genomatix.com
User Manual | Documentation | GeneGrid
https://genegrid.genomatix.com/grid/doc/help/user-manual
GeneGrid enables you to quickly interpret SNVs and small indel variants from human sequencing data. Variants from targeted panels, exome and whole genome sequencing are annotated using a variety of annotation sources. You can filter the list for those annotated variants in the samples individually, perform trio analyses or compare case and control sets using multiple samples. GeneGrid is designed to support the latest web browsers. We support the current versions of Chrome. And Internet Explorer 11.
grch37-cancer.sanger.ac.uk
COSMIC: Data Submission Page
http://grch37-cancer.sanger.ac.uk/cosmic/submissions
I am an author, how should I describe mutation data in my publications? We list here some guidelines for authors to help improve the speed of curation for an increasing volume of literature relevant to COSMIC and to ensure the continuing accuracy of our curation. By following these guidelines authors will contribute to the quick and efficient dissemination of their research results via COSMIC. It is much easier and quicker for us to map reported mutations to COSMIC reference sequences if the author has s...
grch37-cancer.sanger.ac.uk
COSMIC: Help home page
http://grch37-cancer.sanger.ac.uk/cosmic/help
Welcome to the COSMIC Help Pages. Please select a help topic from the index on the right hand panel. The Catalogue Of Somatic Mutations In Cancer (COSMIC) is a comprehensive database of somatic mutations. This dataset can be examined in the following ways -. COSMIC Website: grch37-cancer.sanger.ac.uk/cosmic. COSMIC Whole Genomes: grch37-cancer.sanger.ac.uk/wgs. COSMIC Cell Lines Project: grch37-cancer.sanger.ac.uk/cell lines. COSMIC Genome Browser: grch37-cancer.sanger.ac.uk/jbrowse/? After searching, th...
grch37-cancer.sanger.ac.uk
COSMIC: Cancer Browser
http://grch37-cancer.sanger.ac.uk/cosmic/browse/tissue
Adrenal gland ( 2146 / 8624 ). Autonomic ganglia ( 786 / 7626 ). Biliary tract ( 1630 / 6466 ). Bone ( 1582 / 8888 ). Breast ( 9532 / 46239 ). Central nervous system ( 15975 / 53111 ). Cervix ( 546 / 5733 ). Endometrium ( 3348 / 16164 ). Eye ( 1128 / 3828 ). Fallopian tube ( 3 / 10 ). Gastrointestinal tract (site indeterminate) ( 139 / 1512 ). Genital tract ( 206 / 681 ). Haematopoietic and lymphoid tissue ( 101853 / 400204 ). Kidney ( 4163 / 15193 ). Large intestine ( 44005 / 178395 ). NS ( 1814 / 4977 ).
