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Mendes Research Group

The Mendes Research Group

http://www.comp-sys-bio.org/

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CONTACTS AT COMP-SYS-BIO.ORG

PEDRO MENDES

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BLA●●●URG , VA, 24060

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PEDRO MENDES

346 Co●●●●●●Circle

BLA●●●URG , VA, 24060

US

1.54●●●●2677
pe●●●@gepasi.org

View this contact

PEDRO MENDES

346 Co●●●●●●Circle

BLA●●●URG , VA, 24060

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1.54●●●●2677
pe●●●@gepasi.org

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Mendes Research Group | comp-sys-bio.org Reviews
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The Mendes Research Group
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1 systems biology
2 computational systems biology
3 computational biology
4 biochemical networks
5 biochemistry
6 modeling
7 simulation
8 copasi
9 gepasi
10
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Mendes Research Group | comp-sys-bio.org Reviews

https://comp-sys-bio.org

The Mendes Research Group

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1

Mendes Research Group

http://www.comp-sys-bio.org/index.html

Professor Pedro Mendes Computational Systems Biology. We follow the Systems Biology. Approach, where biological phenomena are seen as resulting from the interactions of its constituents. Interpreting these phenomena requires the use of quantitative methods and computation. We work on many aspects of Computational Systems Biology:. Development of modelling and simulation software (like COPASI. Construction of large-scale cellular models (digital organisms). Parameter estimation and sensitivity analysis.

2

Mendes Research Group - News

http://www.comp-sys-bio.org/news0017.html

Professor Pedro Mendes Computational Systems Biology. Liver iron model highlighted in BioModels. Posted on: Jun 9, 2014. Has selected our model of liver iron metabolism as the June model of the month. The model was published on November 2013 in PLOS Computational Biology. Is licensed under a Creative Commons Attribution 4.0 International License. This page uses the Perfect 'Full Page' 1 column Liquid Layout.

3

Mendes Research Group - Funding

http://www.comp-sys-bio.org/funding.html

Professor Pedro Mendes Computational Systems Biology. Funding is essential to research, without it science would not be possible. We are grateful to a number of generous funding agencies for their support to our work. And support of its users in the UK. And support of its biomedical users in the USA. Joint PI with Stefan Hoops. Development of the ChEBI. Database to serve systems biology projects (eg metabolic reconstructions). Large-scale metabolic models and parameter estimation for biotechnology.

4

Mendes Research Group - Publications

http://www.comp-sys-bio.org/publications.html

Professor Pedro Mendes Computational Systems Biology. Our publications, listed by year and with links to abstract and/or full text. You can also find Pedro's publications on Google Scholar. 109 [ full text. In press. [ full text. Scharm M, Waltemath D, Mendes P, Wolkenhauer O (2016) COMODI: An ontology to characterise differences in versions of computational models in biology. J Biomed. Semantics. 46 [ full text. 245-246 [ full text. 11 [ ful text. D1):D1214-9. [ ful text. 710-23. [ ful text. Villaverde ...

5

Mendes Research Group - News

http://www.comp-sys-bio.org/news0018.html

Professor Pedro Mendes Computational Systems Biology. Postdoc position in iron metabolism modeling in Farmington, CT. Posted on: Aug 20, 2014. We have an open position for a postdoctoral researcher to work on the area of iron metabolism modeling at the Center for Quantitative Medicine. Or other SBML software packages. To apply, please send your CV, a brief statement of research interests, and contact information for three references to Kathy Black at kblack@uchc.edu. E1003299 [ full text. Hower, V., ...

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ondex.org ondex.org

Ondex - data integration and visualisation

http://www.ondex.org/ack.shtml

Documentation and sample graphs. The Ondex SABR Project. Edgar Wingender (geneXplain and University Medical Center Goettingen). Charlie Hodgman (University of Nottingham, CPIB). Igor Goryanin (University of Edinburgh, CSBE). Jacob Kohler ( Dow AgroSciences. Philippe Sanseau ( GSK. Ralf Hofestadt (University of Bielefeld). The Ondex SABR project is funded by BBSRC Grants BBS/B/13640 and BB/F006039/1. Department of Computational and Systems Biology ( CSYS. Centre for Bioenergy and Climate Change ( BCC.

cqm.uchc.edu cqm.uchc.edu

Faculty | Center for Quantitative Medicine

http://cqm.uchc.edu/people/faculty

Skip to UConn Search. Center for Quantitative Medicine. Search in http:/ cqm.uchc.edu/. Center for Quantitative Medicine. Search in http:/ cqm.uchc.edu/. Thomas P. Agresta, M.D., M.B.I. Professor, Family Medicine. Health informatics including the optimal use and adoption of electronic health records (EHRs), primary care use of health information tools, clinical decision support, use of smartphones and handheld computers in education and patient care, and patient-centered use of technology. Computational ...

cloud.copasi.org cloud.copasi.org

Cloud COPASI - Help

http://cloud.copasi.org/help

Cloud-COPASI is a web-based tool for running computationally intensive. Simulation and analysis tasks in parallel on a high-throughput computing pool. Cloud-COPASI can connect to existing computing pools. Or provides a simple interface for launching a new computing pool. Using the Amazon Elastic Compute Cloud (EC2). Cloud-COPASI can run a number of simulation and analysis tasks. Including global sensitivity analyses. Models must be prepared using COPASI. At the University of Manchester, UK.

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Mendes Research Group

Professor Pedro Mendes Computational Systems Biology. We follow the Systems Biology. Approach, where biological phenomena are seen as resulting from the interactions of its constituents. Interpreting these phenomena requires the use of quantitative methods and computation. We work on many aspects of Computational Systems Biology:. Development of modelling and simulation software (like COPASI. Construction of large-scale cellular models (digital organisms). Parameter estimation and sensitivity analysis.

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