genomeview.org genomeview.org

genomeview.org

GenomeView

GenomeView is a genome browser and annotation editor. Annotation, multiple alignments, syntenic mappings and more can be displayed. Many file formats are supported for input and output. New functionality can be added using a plugin architecture.

http://www.genomeview.org/

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GenomeView | genomeview.org Reviews
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GenomeView is a genome browser and annotation editor. Annotation, multiple alignments, syntenic mappings and more can be displayed. Many file formats are supported for input and output. New functionality can be added using a plugin architecture.
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GenomeView | genomeview.org Reviews

https://genomeview.org

GenomeView is a genome browser and annotation editor. Annotation, multiple alignments, syntenic mappings and more can be displayed. Many file formats are supported for input and output. New functionality can be added using a plugin architecture.

INTERNAL PAGES

genomeview.org genomeview.org
1

How do I create PDF/vector graphics/publication images? | GenomeView

http://www.genomeview.org/content/how-do-i-create-pdfvector-graphicspublication-images

Support - Frequently asked questions. Thomas Abeel, Broad Institute and Ghent University. Thomas Van Parys, VIB. How do I create PDF/vector graphics/publication images? Wed, 05/15/2013 - 19:32 Thomas Abeel. You will want to install the Save2PDF plugin. Download the zip-file, and extract it. Copy the jar file to your '.genomeview/plugin' folder. On Linux, it should be (hidden) in your /home/ directory. On Windows: C: Users .genomeview plugin. Plugins' saying "Export Export image as PDF.".

2

Quick start guide | GenomeView

http://www.genomeview.org/content/quick-start-guide

Support - Frequently asked questions. Thomas Abeel, Broad Institute and Ghent University. Thomas Van Parys, VIB. You may also be interested in places where to find further documentation. Get going with GenomeView with demo data. Start GenomeView with demo data for B. anthracis preloaded. Start GenomeView with demo data for C. elegans preloaded. Start GenomeView with demo data for D. melanogaster preloaded. More information about demo data set, i.e. what types of data are included etc. Step 3: Waiting for...

3

Tutorials | GenomeView

http://www.genomeview.org/content/tutorials

Support - Frequently asked questions. Thomas Abeel, Broad Institute and Ghent University. Thomas Van Parys, VIB. We currently offer a limited set of tutorials on various topics. If you have a nice idea or you wish to contribute a tutorial, let us know. Tutorial: Getting started with NGS data. Tutorial: Loading a MAF file from UCSC. Tutorial: Getting started with NGS data. Bioinformatics and Evolutionary Genomics group at VIB. Source forge project page. ISMB Killer App Award 2010.

4

Why are my bam/tdf files not showing? | GenomeView

http://www.genomeview.org/content/why-are-my-bamtdf-files-not-showing

Support - Frequently asked questions. Thomas Abeel, Broad Institute and Ghent University. Thomas Van Parys, VIB. Why are my bam/tdf files not showing? Wed, 05/15/2013 - 17:34 Thomas Abeel. I used to be able to see BAM files and now they don't work anymore. Oracle made a change in Java7u21 that broke support for BAM files in one of our dependencies. Upgrading to a recent version ( =2144) of GenomeView resolves this issue. Bioinformatics and Evolutionary Genomics group at VIB. Source forge project page.

5

Support - Frequently asked questions | GenomeView

http://www.genomeview.org/support

Support - Frequently asked questions. Thomas Abeel, Broad Institute and Ghent University. Thomas Van Parys, VIB. Support - Frequently asked questions. This section of the documentation tries to address a number of common and less common issues you can come across while working with GenomeView. If your problem is not addressed here, please:. Send an e-mail to the team. In order to help you as quickly as possible, make sure to include the following information:. Which version of GV are you running? You wan...

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LINKS TO THIS WEBSITE

tbdb.org tbdb.org

Tuberculosis

http://www.tbdb.org/tbdbPages/announcementsArchive.shtml

News and Updates Archive. News and Updates Archive. Search for features by type. Filter on an additional text query if desired. Search and browse publications with gene expression data that are stored in TBDB. Gene Expression Samples and Conditions:. Search for a gene over all published samples and explore the expression significance of the indicated gene. Search for a gene in the published data sets. You will be able to explore the gene expression of the indicated gene in each publication. We hope this ...

abeel.be abeel.be

T wiki

http://www.abeel.be/wiki

How do microbes impact our quality of life? How can we positively influence this impact? Detection of mixed infections from NGS data. Is an interactive genome browser and annotation editor that can deal with a multitude of sequencing and (comparative) genomics data sets. Is a collection of machine learning algorithms aimed at software engineers and programmers. It has well documented source code and provides plenty of code samples and tutorials. Other Open Source projects. Abeel Java Toolkit (AJT). Don't...

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GenomeView

Support - Frequently asked questions. TU Delft, formerly Broad Institute and VIB - Ghent University. Thomas Van Parys, VIB. GenomeView is a next-generation stand-alone genome browser and editor initiated in the BEG group. At VIB, then further developed at Broad Institute. And currently maintained at TU Delft. Get started with a five minute quick-start guide. That will get up and running in no time. Click the launch button to start GenomeView. How are display labels of features determined? First of all, w...

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Introduction to Circos, Features and Uses // CIRCOS Circular Genome Data Visualization

Circos at the EMBO NGS workshop. In Tunis, Sept 15–25. Circos is back for 4rd year at 2014 Bioinformatics and Comparative Genome Analysis. Course by the Pasteur Institute—Athens, May 7. 20 imperatives of information design. Mdash; BioVis 2012. Circos manages the connectome of 50 brains. Mdash;NeuroImage 28 Jan. Interested in network visualization? See my hive plot. Safely learn about the plague, ebola and marburg at the deadly genomes. New England Journal of Medicine animation. The image shows the illega...

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Introduction to Circos, Features and Uses // CIRCOS Circular Genome Data Visualization

Circos at the EMBO NGS workshop. In Tunis, Sept 15–25. Circos is back for 4rd year at 2014 Bioinformatics and Comparative Genome Analysis. Course by the Pasteur Institute—Athens, May 7. 20 imperatives of information design. Mdash; BioVis 2012. Circos manages the connectome of 50 brains. Mdash;NeuroImage 28 Jan. Interested in network visualization? See my hive plot. Safely learn about the plague, ebola and marburg at the deadly genomes. New England Journal of Medicine animation. The image shows the illega...