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INTERSNP - Genome-wide Interaction Analysis Software

INTERSNP is a software for genome-wide interaction analysis (GWIA) of case-control SNP data and quantitative traits.

http://intersnp.meb.uni-bonn.de/

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INTERSNP - Genome-wide Interaction Analysis Software | intersnp.meb.uni-bonn.de Reviews
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INTERSNP is a software for genome-wide interaction analysis (GWIA) of case-control SNP data and quantitative traits.
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1 INTERSNP
2 Genome-Wide Interaction Analysis
3 Herold
4 GWIA
5 CaseOnly
6 PAA
7 Pathway Association Analysis
8 Rare Variant Analysis
9 Varible Threshold
10 Haplotype Analysis
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downloads,usage,manual,course,software from imbie,disclaimer,imprint,statistical evidence,genetic/biologic relevance,new features,recent features,intersnp rare,adaptive permutation testing,genome wide haplotype analysis,case only analysis,and more
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INTERSNP - Genome-wide Interaction Analysis Software | intersnp.meb.uni-bonn.de Reviews

https://intersnp.meb.uni-bonn.de

INTERSNP is a software for genome-wide interaction analysis (GWIA) of case-control SNP data and quantitative traits.

INTERNAL PAGES

intersnp.meb.uni-bonn.de intersnp.meb.uni-bonn.de
1

Further software from IMBIE

https://intersnp.meb.uni-bonn.de/SoftwareFromImbie.html

Further software from the IMBIE. Is a software for single-marker analysis and, in particular, joint analysis of unphased genotype data from tightly linked markers (haplotype analysis). Is a program package with a focus on genetic-epidemiological questions as they typically occur prior to linkage analysis. Is a software for meta-analysis of genome wide association studies. Is a software for meta-analysis of multiple regression models in genome-wide association studies.

2

Imprint

https://intersnp.meb.uni-bonn.de/Imprint.html

Responsible editor and webmaster of this website according to 6 MDStV is:. Institute for Medical Biometry, Informatics and Epidemiology. Internet: http:/ intersnp.meb.uni-bonn.de.

3

Usage

https://intersnp.meb.uni-bonn.de/Usage.html

INTERSNP is written in C/C. And can be operated from the command line. G intersnp.cpp -o intersnp -lm -O3. Parallel version: g intersnp.cpp -o intersnpParallel -lm -O3 -fopenmp. Modification of the source code is necessary for compiling a parallel version! Some examples with selectionfiles.

4

INTERSNP-Course in November 2012

https://intersnp.meb.uni-bonn.de/course.html

Basic statistics with R. The Institute for Medical Biometry, Informatics and Epidemiology in Bonn, will organize a two-day software course. Ldquo;Multi-marker analysis with INTERSNP“. The course will cover GWAS analysis of case-control and quantitative trait data, with emphasis on multi-marker analysis, including interaction analysis, pathway analysis, rare variant analysis, genetic matching and clustering, and meta-analysis. Tim Becker’s lab. 22/11/ – 23/11/2012. IMBIE, Sigmund-Freud-Str. 25, Bonn.

5

Disclaimer

https://intersnp.meb.uni-bonn.de/Disclaimer.html

2 Referrals and links. 5 Legal validity of this disclaimer. This disclaimer is to be regarded as part of the internet publication which you were referred from. If sections or individual terms of this statement are not legal or correct, the content or validity of the other parts remain uninfluenced by this fact. The present disclaimer based on the free service of http:/ www.disclaimer.de.

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Epistasis - Wikipedia, the free encyclopedia

https://en.wikipedia.org/wiki/Epistasis

From Wikipedia, the free encyclopedia. Not to be confused with epistaxis. The gene for total baldness. Is epistatic to those for blond hair. The baldness phenotype supersedes genes for hair colour and so the effects are non-additive. Is the phenomenon of the effect of one gene. Being dependent on the presence of one or more 'modifier genes', the genetic background. Thus, epistatic mutations. Have different effects in combination than individually. It was originally a concept from genetics. Have tended to...

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Further Software from IMBIE

http://pedigreeexplorer.meb.uni-bonn.de/softwareFromImbie_pedi.html

Further software from the IMBIE. Is a software for single-marker analysis and, in particular, joint analysis of unphased genotype data from tightly linked markers (haplotype analysis). Is a software for genome-wide interaction analysis (GWIA) of case-control SNP data. SNPs are selected for joint analysis using a priori information. Sources of information to define meaningful strategies can be. Single marker association at a moderate level, computed from the own data) and.

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Further Software from IMBIE

http://yamas.meb.uni-bonn.de/softwareFromImbie_yam.html

Further software from the IMBIE. Is a software for single-marker analysis and, in particular, joint analysis of unphased genotype data from tightly linked markers (haplotype analysis). Is a software for genome-wide interaction analysis (GWIA) of case-control SNP data. SNPs are selected for joint analysis using a priori information. Sources of information to define meaningful strategies can be. Single marker association at a moderate level, computed from the own data) and.

metainter.meb.uni-bonn.de metainter.meb.uni-bonn.de

Further software from IMBIE

http://metainter.meb.uni-bonn.de/SoftwareFromImbie.html

Further software from the IMBIE. Is a software for genome-wide interaction analysis (GWIA) of case-control SNP data and quantitative traits. SNPs are selected for joint analysis using a priori information. Sources of information to define meaningful strategies can be statistical evidence (single marker association at a moderate level, computed from the own data) and genetic/biologic relevance (genomic location, function class or pathway information).

metainter.meb.uni-bonn.de metainter.meb.uni-bonn.de

METAINTER - Manual

http://metainter.meb.uni-bonn.de/METAINTER_Manual.html

Meta-analysis tool for multiple regression models in. Genome-wide association studies allowing for interaction. German Center for Neurodegenerative Diseases (DZNE), Bonn. Institute for Medical Biometry, Informatics and Epidemiology, University of Bonn. May 5, 2014. 21 Fisher’s method. 22 Stouffer’s method with weights. 23 Stouffer’s method with weights and effect directions. 24 Method of synthesis of regression slopes. 25 Meta-analysis methods: summary table. 31 Within study parameter coding. It is assum...

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Further Software from IMBIE

http://famhap.meb.uni-bonn.de/softwareFromImbie_fam.html

Further software from the IMBIE. Is a software for genome-wide interaction analysis (GWIA) of case-control SNP data. SNPs are selected for joint analysis using a priori information. Sources of information to define meaningful strategies can be. Single marker association at a moderate level, computed from the own data) and. Genomic location, function class or pathway information). Is a program package with a focus on genetic-epidemiological questions as they typically occur prior to linkage analysis.

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INTERSNP - Genome-wide Interaction Analysis Software

INTERSNP is a software for genome-wide interaction analysis (GWIA) of case-control SNP data and quantitative traits. SNPs are selected for joint analysis using a priori information. Sources of information to define meaningful strategies can be. Single marker association at a moderate level, computed from the own data) and. Genomic location, function class or pathway information). To subscribe to our newsletter, write us an email. New Version: v1.15 (22 January 2015). Methods for stratified analysis.

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