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YAMAS - Yet Another Meta-Anaysis Software

YAMAS is a software for meta-analysis of genome wideassociation studies.

http://yamas.meb.uni-bonn.de/

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YAMAS - Yet Another Meta-Anaysis Software | yamas.meb.uni-bonn.de Reviews

https://yamas.meb.uni-bonn.de

YAMAS is a software for meta-analysis of genome wideassociation studies.

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1

YAMAS - Yet Another Meta-Anaysis Software

http://yamas.meb.uni-bonn.de/index.html

YAMAS is a software for meta-analysis of genome wide association studies. Meta-analysis marker by marker with fixed and random effects. Filling up untyped or missing markers with proxy markers prior to meta-analysis – a reference file containing r2-values from HAPMAP/1k is provided. Parallel reading of files. YAMAS is able to parse any tabulate file format. Some algorithms are parallelized.

2

Downloads

http://yamas.meb.uni-bonn.de/downloads_yam.html

Reference files build 36. Reference files build 37. If you e ncounter a. Ny problems, please do not hesitate to.

3

Downloads | Documentation

http://yamas.meb.uni-bonn.de/documentation_yam.html

4

Downloads | HowTo

http://yamas.meb.uni-bonn.de/howto_yam.html

YAMAS can be operated from the command line. Yamas931static -c yamas.cfg - skiplines 1 -l outputname -a fillwithproxies - comparison. First n lines of input-files are headings and ignored. Name of result file. Choose proxy algorithm; default is -a pointwise, standard meta-analysis. Write input of studies to output file. You get all possible options with: ./yamas931static -help. A configuration file is obligatory to run the program. Note: You will find the proxyfile under Downloads/Reference files build 37.

5

Imprint

http://yamas.meb.uni-bonn.de/imprint_yam.html

Responsible editor and webmaster of this website according to 6 MDStV is:. Institute for Medical Biometry, Informatics and Epidemiology. Email: meesters(at)imbie.uni-bonn.de. Internet: http:/ yamas.meb.uni-bonn.de.

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Further software from IMBIE

http://intersnp.meb.uni-bonn.de/SoftwareFromImbie.html

Further software from the IMBIE. Is a software for single-marker analysis and, in particular, joint analysis of unphased genotype data from tightly linked markers (haplotype analysis). Is a program package with a focus on genetic-epidemiological questions as they typically occur prior to linkage analysis. Is a software for meta-analysis of genome wide association studies. Is a software for meta-analysis of multiple regression models in genome-wide association studies.

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Further Software from IMBIE

http://pedigreeexplorer.meb.uni-bonn.de/softwareFromImbie_pedi.html

Further software from the IMBIE. Is a software for single-marker analysis and, in particular, joint analysis of unphased genotype data from tightly linked markers (haplotype analysis). Is a software for genome-wide interaction analysis (GWIA) of case-control SNP data. SNPs are selected for joint analysis using a priori information. Sources of information to define meaningful strategies can be. Single marker association at a moderate level, computed from the own data) and.

metainter.meb.uni-bonn.de metainter.meb.uni-bonn.de

Further software from IMBIE

http://metainter.meb.uni-bonn.de/SoftwareFromImbie.html

Further software from the IMBIE. Is a software for genome-wide interaction analysis (GWIA) of case-control SNP data and quantitative traits. SNPs are selected for joint analysis using a priori information. Sources of information to define meaningful strategies can be statistical evidence (single marker association at a moderate level, computed from the own data) and genetic/biologic relevance (genomic location, function class or pathway information).

famhap.meb.uni-bonn.de famhap.meb.uni-bonn.de

Further Software from IMBIE

http://famhap.meb.uni-bonn.de/softwareFromImbie_fam.html

Further software from the IMBIE. Is a software for genome-wide interaction analysis (GWIA) of case-control SNP data. SNPs are selected for joint analysis using a priori information. Sources of information to define meaningful strategies can be. Single marker association at a moderate level, computed from the own data) and. Genomic location, function class or pathway information). Is a program package with a focus on genetic-epidemiological questions as they typically occur prior to linkage analysis.

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YAMAS - Yet Another Meta-Anaysis Software

YAMAS is a software for meta-analysis of genome wide association studies. Meta-analysis marker by marker with fixed and random effects. Filling up untyped or missing markers with proxy markers prior to meta-analysis – a reference file containing r2-values from HAPMAP/1k is provided. Parallel reading of files. YAMAS is able to parse any tabulate file format. Some algorithms are parallelized.

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