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MLST - Home

Welcome to the Multi Locus Sequence Typing home page. MLST is a nucleotide sequence based approach for the unambiguous characterisation of isolates of bacteria and other organisms via the internet. The aim of MLST is to provide a portable, accurate, and highly discriminating typing system that can be used for most bacteria and some other organisms. It is envisaged that this approach will be particularly helpful for the typing of bacterial pathogens. This site is hosted at Imperial College.

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Aanensen, David

Infectious●●●●●●●●●●idemiology

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MLST - Home | mlst.net Reviews
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Welcome to the Multi Locus Sequence Typing home page. MLST is a nucleotide sequence based approach for the unambiguous characterisation of isolates of bacteria and other organisms via the internet. The aim of MLST is to provide a portable, accurate, and highly discriminating typing system that can be used for most bacteria and some other organisms. It is envisaged that this approach will be particularly helpful for the typing of bacterial pathogens. This site is hosted at Imperial College.
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1 mlst
2 policy document
3 data analysis
4 databases
5 submissions
6 news
7 links
8 new mlst schemes
9 in development
10 site requirements
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MLST - Home | mlst.net Reviews

https://mlst.net

Welcome to the Multi Locus Sequence Typing home page. MLST is a nucleotide sequence based approach for the unambiguous characterisation of isolates of bacteria and other organisms via the internet. The aim of MLST is to provide a portable, accurate, and highly discriminating typing system that can be used for most bacteria and some other organisms. It is envisaged that this approach will be particularly helpful for the typing of bacterial pathogens. This site is hosted at Imperial College.

SUBDOMAINS

pacnes.mlst.net pacnes.mlst.net

Propionibacterium acnes - Database

Draw tree using own MLST data. The Pacnes MLST scheme was developed by Hans B Lomholt and Mogens Kilian, Department of Medical Microbiology and Immunology, Aarhus University, Aarhus, Denmark. Lomholt HB, Kilian M (2010) Population Genetic Analysis of. Identifies a Subpopulation and Epidemic Clones Associated with Acne. PLoS ONE 5(8): e12277. doi:10.1371/journal.pone.0012277. This site is hosted at Imperial College and development is funded by the Wellcome Trust.

leptospira.mlst.net leptospira.mlst.net

Leptospira spp. - Database

Due to the retirement of Brian Spratt it has been agreed to transfer the MLST databases hosted at mlst.net from Imperial College London to Oxford, where Keith Jolley and Martin Maiden have kindly agreed to host them at PubMLST.org. This agreement will provide a home for the MLST database for the benefit of the international microbiology community. David Aanensen and Brian Spratt. To access the database please visit: http:/ pubmlst.org/leptospira/. You can still use eBURST and we shall be updating shortly:.

haemophilus.mlst.net haemophilus.mlst.net

Haemophilus influenzae - Database

Due to the retirement of Brian Spratt it has been agreed to transfer the MLST databases hosted at mlst.net from Imperial College London to Oxford, where Keith Jolley and Martin Maiden have kindly agreed to host them at PubMLST.org. This agreement will provide a home for the MLST database for the benefit of the international microbiology community. David Aanensen and Brian Spratt. To access the database please visit: http:/ pubmlst.org/hinfluenzae/.

efaecalis.mlst.net efaecalis.mlst.net

Enterococcus faecalis - Database

No STs - 623. No Isolates - 1201. Due to the retirement of Brian Spratt it has been agreed to transfer the MLST databases hosted at mlst.net from Imperial College London to Oxford, where Keith Jolley and Martin Maiden have kindly agreed to host them at PubMLST.org. David Aanensen and Brian Spratt. To access the database please visit: http:/ pubmlst.org/efaecalis/. NB This site will no longer be up-to-date as all new strains are now only being added to the PubMLST site. Compare profile to refset.

efaecium.mlst.net efaecium.mlst.net

Enterococcus faecium - Database

Due to the retirement of Brian Spratt it has been agreed to transfer the MLST databases hosted at mlst.net from Imperial College London to Oxford, where Keith Jolley and Martin Maiden have kindly agreed to host them at PubMLST.org. The E faecium site has now transferred - other species databases will be migrating to PubMLST.org in due course. This agreement will provide the security of these MLST databases for the benefit of the international microbiology community. David Aanensen and Brian Spratt.

eburst.mlst.net eburst.mlst.net

eBURST V3

16/02/2006 - eBURST V3 released. What's new in Version 3 -Click here. EBURSTv3 has been developed and is hosted at. The Department of Infectious Disease Epidemiology.

cneoformans.mlst.net cneoformans.mlst.net

Cryptococcus neoformans - Database

Please note: The C. neoformans. Database has now moved to :. Http:/ mlst.mycologylab.org/DefaultInfo.aspx?

chlamydia.mlst.net chlamydia.mlst.net

Chlamydia trachomatis - Database

Due to the retirement of Brian Spratt it has been agreed to transfer the MLST databases hosted at mlst.net from Imperial College London to Oxford, where Keith Jolley and Martin Maiden have kindly agreed to host them at PubMLST.org. This agreement will provide a home for the MLST database for the benefit of the international microbiology community. David Aanensen and Brian Spratt. To access the database please visit: http:/ pubmlst.org/chlamydiales/.

cglabrata.mlst.net cglabrata.mlst.net

Candida glabrata - Database

MLST-maps - Click here. View global distribution of isolates and STs. Draw tree using own MLST data. Compare profile to refset. Image courtesy of D.R. Soll, University of Iowa. This MLST scheme was developed by, and is curated by, Andrew Dodgson. At the University of Manchester. For comments, queries, or suggestions please contact David Aanensen.

calbicans.mlst.net calbicans.mlst.net

Candida albicans - consensus - Database

Candida albicans - consensus. Due to the retirement of Brian Spratt it has been agreed to transfer the MLST databases hosted at mlst.net from Imperial College London to Oxford, where Keith Jolley and Martin Maiden have kindly agreed to host them at PubMLST.org. This agreement will provide a home for the MLST database for the benefit of the international microbiology community. David Aanensen and Brian Spratt. To access the database please visit: http:/ pubmlst.org/calbicans/.

INTERNAL PAGES

mlst.net mlst.net
1

NEWS

http://www.mlst.net/news

Jun 07 MLST-maps - a facility for mapping the global distribution of Sequence Types. Feb/07 Phineus - A tool for repetitive sequencing projects BETA software released Click here to visit the site. Feb/07Cryptococcus neoformans MLST scheme launched - http:/ cneoformans.mlst.net. Feb/06 eBURST v3 - Click here to visit the site. Sep/05 Is it a pneumococcus? Aug/05 Streptococcus suis MLST scheme launched - http:/ ssuis.mlst.net. MLST scheme launched - http:/ cglabrata.mlst.net.

2

MLST Databases

http://www.mlst.net/databases/default.asp

Please select the database you would like to access / query from the left hand menu.

3

LINKS

http://www.mlst.net/links/default.asp

Should you feel that a link is missing or you would like to suggest a site for inclusion please contact David Aanensen.

4

Submission of data

http://www.mlst.net/submissions/default.asp

All users are encouraged to submit their strain information and new allele sequences to our databases. This information will then be made available on the web site so that the web site can become an increasingly useful resource for global epidemiology of these organisms. In order to function as such a resource and to maintain the quality of the data, the databases are hand curated, and all entries will be checked before final entry into the main database.

5

NEWS

http://www.mlst.net/news/default.asp

Jun 07 MLST-maps - a facility for mapping the global distribution of Sequence Types. Feb/07 Phineus - A tool for repetitive sequencing projects BETA software released Click here to visit the site. Feb/07Cryptococcus neoformans MLST scheme launched - http:/ cneoformans.mlst.net. Feb/06 eBURST v3 - Click here to visit the site. Sep/05 Is it a pneumococcus? Aug/05 Streptococcus suis MLST scheme launched - http:/ ssuis.mlst.net. MLST scheme launched - http:/ cglabrata.mlst.net.

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LINKS TO THIS WEBSITE

sepidermidis.mlst.net sepidermidis.mlst.net

Staphylococcus epidermidis - Organismal Information

http://sepidermidis.mlst.net/earth

View geographical locations of isolates in the database and details regarding Sequence Types per country. Click the Google icon to view Staphylococcus epidermidis. A Javascript enabled browser is required. An Installation of Google Earth is required.

sepidermidis.mlst.net sepidermidis.mlst.net

Staphylococcus epidermidis - Links

http://sepidermidis.mlst.net/misc/links.asp

sepidermidis.mlst.net sepidermidis.mlst.net

Staphylococcus epidermidis - Organismal Information

http://sepidermidis.mlst.net/misc/info.asp

Multilocus sequence typing of Staphylococcus epidermidis. PCR Conditions and Sequencing. Determining Allelic Numbers and Sequence Types. Comparison of Isolates With the S. epidermidis. Has become a leading cause of nosocomial infections. Its ability to produce a thick, multilayered biofilm allows S. epidermidis. Remains a clinically important pathogen. Three MLST schemes were previously available for S. epidermidis. Two of which were published during the same month by Wang et al. And Wisplinghoff et al.

sepidermidis.mlst.net sepidermidis.mlst.net

MLST - Unique profile treedraw

http://sepidermidis.mlst.net/eburst

Click here to see new features in Version 3. Please make a choice -. Enter your own profile data. Run eBURST on the entire. To download the entire eBURSTv3 readme as .pdf. Or for full instructions and Readme please visit http:/ eburst.mlst.net.

pubmlst.org pubmlst.org

MLST databases

http://pubmlst.org/databases.shtml

All species MLST databases and published schemes. MLST databases are hosted at the University of Oxford, UK. Imperial College, London, UK. The University of Warwick, UK. And the Pasteur Institute, Paris, France. Order by: Organism Profiles. Chart shows databases with at least 1000 profiles or isolates. Data updated automatically: 2016-08-31. Website and link to database. Spilker et al. (2012) J Clin Microbiol. Isolate characterisation and population structure analysis. Population and evolutionary analyses.

chlamydia.mlst.net chlamydia.mlst.net

Chlamydia trachomatis - Database

http://chlamydia.mlst.net/default.asp

Due to the retirement of Brian Spratt it has been agreed to transfer the MLST databases hosted at mlst.net from Imperial College London to Oxford, where Keith Jolley and Martin Maiden have kindly agreed to host them at PubMLST.org. This agreement will provide a home for the MLST database for the benefit of the international microbiology community. David Aanensen and Brian Spratt. To access the database please visit: http:/ pubmlst.org/chlamydiales/.

chlamydia.mlst.net chlamydia.mlst.net

Chlamydia trachomatis - Download STs

http://chlamydia.mlst.net//sql/download_st.asp

Download STs and allelic profiles. Click to view as HTML. Click to view as comma delimited text. Click to view as TAB delimited text. Click to concatenate STs in MEGA format. Click to concatenate STs in FASTA format.

chlamydia.mlst.net chlamydia.mlst.net

Chlamydia trachomatis - Organismal Information

http://chlamydia.mlst.net/misc/info.asp

Belongs to the family Chlamydiaceae, order Chlamydiales. It is an obligate intracellular human pathogen that is responsible for the leading cause of preventable blindness and bacterial sexually transmitted diseases (STD) worldwide. Species are the virulent lymphogranuloma venereum (LGV) strains that cause invasive diseases including suppurative lymphadenitis and hemorrhagic proctitis. A novel MLST scheme has recently been developed for. By Deborah Dean, Raymond Wan, Tigist Mehari (Children’s Hospit...

chlamydia.mlst.net chlamydia.mlst.net

MLST - Unique profile treedraw

http://chlamydia.mlst.net/eburst

Click here to see new features in Version 3. Please make a choice -. Enter your own profile data. Run eBURST on the entire. To download the entire eBURSTv3 readme as .pdf. Or for full instructions and Readme please visit http:/ eburst.mlst.net.

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Fungal MLST Database

International Fungal Multi Locus Sequence Typing Database. Multi-Locus Sequence Typing (MLST). The purpose of this webpage is to make MLST schemes publicly available for the following human pathogenic fungal species:. Scedosporium aurantiacum, Scedosporium apiospermum, Pseudallescheria boydii. What's new: See the latest news about Fungal MLST. Contributors of the MLST database. Westmead Millennium Institute, Sydney, Australia.

mlst.net mlst.net

MLST - Home

Welcome to the Multi Locus Sequence Typing home page. MLST is a nucleotide sequence based approach for the unambiguous characterisation of isolates of bacteria and other organisms via the internet. The aim of MLST is to provide a portable, accurate, and highly discriminating typing system that can be used for most bacteria and some other organisms. It is envisaged that this approach will be particularly helpful for the typing of bacterial pathogens. This site is hosted at Imperial College.

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The Midland Legal Support Trust - Home

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mlsta.com -&nbspmlsta Resources and Information.

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