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Propionibacterium acnes - Database

Draw tree using own MLST data. The Pacnes MLST scheme was developed by Hans B Lomholt and Mogens Kilian, Department of Medical Microbiology and Immunology, Aarhus University, Aarhus, Denmark. Lomholt HB, Kilian M (2010) Population Genetic Analysis of. Identifies a Subpopulation and Epidemic Clones Associated with Acne. PLoS ONE 5(8): e12277. doi:10.1371/journal.pone.0012277. This site is hosted at Imperial College and development is funded by the Wellcome Trust.

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Propionibacterium acnes - Database | pacnes.mlst.net Reviews
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Draw tree using own MLST data. The Pacnes MLST scheme was developed by Hans B Lomholt and Mogens Kilian, Department of Medical Microbiology and Immunology, Aarhus University, Aarhus, Denmark. Lomholt HB, Kilian M (2010) Population Genetic Analysis of. Identifies a Subpopulation and Epidemic Clones Associated with Acne. PLoS ONE 5(8): e12277. doi:10.1371/journal.pone.0012277. This site is hosted at Imperial College and development is funded by the Wellcome Trust.
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Propionibacterium acnes - Database | pacnes.mlst.net Reviews

https://pacnes.mlst.net

Draw tree using own MLST data. The Pacnes MLST scheme was developed by Hans B Lomholt and Mogens Kilian, Department of Medical Microbiology and Immunology, Aarhus University, Aarhus, Denmark. Lomholt HB, Kilian M (2010) Population Genetic Analysis of. Identifies a Subpopulation and Epidemic Clones Associated with Acne. PLoS ONE 5(8): e12277. doi:10.1371/journal.pone.0012277. This site is hosted at Imperial College and development is funded by the Wellcome Trust.

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1

Propionibacterium acnes - Download STs

http://pacnes.mlst.net//sql/download_st.asp

Download STs and allelic profiles. Click to view as HTML. Click to view as comma delimited text. Click to view as TAB delimited text. Click to concatenate STs in MEGA format. Click to concatenate STs in FASTA format.

2

MLST - Unique profile treedraw

http://pacnes.mlst.net/eburstv3

New features in eBURSTv3 are as follows -. JAVA Webstart implementation -allowing local install. Implementation of MultilocusML allowing comprehensive database integration and querying based on eBURST groups. Ability to upload and differentially display user strains against strains within the. Please make a choice -. Run eBURST on the entire. Enter your own profile data for direct comparison against database strains. To download the entire eBURST readme as .pdf.

3

Propionibacterium acnes - Database

http://pacnes.mlst.net/default.asp

Draw tree using own MLST data. The Pacnes MLST scheme was developed by Hans B Lomholt and Mogens Kilian, Department of Medical Microbiology and Immunology, Aarhus University, Aarhus, Denmark. Lomholt HB, Kilian M (2010) Population Genetic Analysis of. Identifies a Subpopulation and Epidemic Clones Associated with Acne. PLoS ONE 5(8): e12277. doi:10.1371/journal.pone.0012277. This site is hosted at Imperial College and development is funded by the Wellcome Trust.

4

MLST - Unique profile treedraw

http://pacnes.mlst.net/sql/uniquetree.asp

Draw tree using own MLST data. For Instructions click -. Paste your data in comma-delimited format as follows:-. Strain A,4,5,6,4,7,9,10,1. Strain B,1,1,2,4,3,3,18,7. Strain C,3,4,5,6,7,9,23,9. WARNING - You must have no spaces on either side of your data. Please submit the form once then click to draw a tree. Please enter your query -.

5

Concatenation

http://pacnes.mlst.net/sql/concatenate

Sequences are trimmed to the 1 reading frame). CONCATENATE ONE EXAMPLE OF EACH ST in MEGA. THE NUCLEOTIDE SEQUENCES AT THE NINE LOCI - Please enter the ST numbers of the STs whose sequences you would like to concatenate, ie 46 for ST46. YOUR OWN ALLELIC PROFILE - Enter your profile below. Below each box is the highest allele number present in the database). YOUR OWN SEQUENCES (enter only 1 unbroken string ie no line breaks etc.).

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MLST Databases

http://www.mlst.net/databases/default.asp

Please select the database you would like to access / query from the left hand menu.

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Propionibacterium acnes - Database

Draw tree using own MLST data. The Pacnes MLST scheme was developed by Hans B Lomholt and Mogens Kilian, Department of Medical Microbiology and Immunology, Aarhus University, Aarhus, Denmark. Lomholt HB, Kilian M (2010) Population Genetic Analysis of. Identifies a Subpopulation and Epidemic Clones Associated with Acne. PLoS ONE 5(8): e12277. doi:10.1371/journal.pone.0012277. This site is hosted at Imperial College and development is funded by the Wellcome Trust.

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