chlamydia.mlst.net
Chlamydia trachomatis - Database
http://chlamydia.mlst.net/default.asp
Due to the retirement of Brian Spratt it has been agreed to transfer the MLST databases hosted at mlst.net from Imperial College London to Oxford, where Keith Jolley and Martin Maiden have kindly agreed to host them at PubMLST.org. This agreement will provide a home for the MLST database for the benefit of the international microbiology community. David Aanensen and Brian Spratt. To access the database please visit: http:/ pubmlst.org/chlamydiales/.
chlamydia.mlst.net
Chlamydia trachomatis - Download STs
http://chlamydia.mlst.net//sql/download_st.asp
Download STs and allelic profiles. Click to view as HTML. Click to view as comma delimited text. Click to view as TAB delimited text. Click to concatenate STs in MEGA format. Click to concatenate STs in FASTA format.
chlamydia.mlst.net
Chlamydia trachomatis - Organismal Information
http://chlamydia.mlst.net/misc/info.asp
Belongs to the family Chlamydiaceae, order Chlamydiales. It is an obligate intracellular human pathogen that is responsible for the leading cause of preventable blindness and bacterial sexually transmitted diseases (STD) worldwide. Species are the virulent lymphogranuloma venereum (LGV) strains that cause invasive diseases including suppurative lymphadenitis and hemorrhagic proctitis. A novel MLST scheme has recently been developed for. By Deborah Dean, Raymond Wan, Tigist Mehari (Children’s Hospit...
chlamydia.mlst.net
Chlamydia trachomatis - Links
http://chlamydia.mlst.net/misc/links.asp
chlamydia.mlst.net
MLST - Unique profile treedraw
http://chlamydia.mlst.net/sql/uniquetree.asp
Draw tree using own MLST data. For Instructions click -. Paste your data in comma-delimited format as follows:-. Strain A,4,5,6,4,7,9,10. Strain B,1,1,2,4,3,3,18. Strain C,3,4,5,6,7,9,23. WARNING - You must have no spaces on either side of your data. Please submit the form once then click to draw a tree. Please enter your query -.
ukmirror1.pubmlst.org
MLST databases
http://ukmirror1.pubmlst.org/databases.shtml
All species MLST databases and published schemes. MLST databases are hosted at the University of Oxford, UK. Imperial College, London, UK. The University of Warwick, UK. And the Pasteur Institute, Paris, France. Order by: Organism Profiles. Chart shows databases with at least 1000 profiles or isolates. Data updated automatically: 2016-01-29. Website and link to database. Spilker et al. (2012) J Clin Microbiol. Isolate characterisation and population structure analysis. Population and evolutionary analyses.
mlst.net
Submission of data
http://www.mlst.net/submissions/default.asp
All users are encouraged to submit their strain information and new allele sequences to our databases. This information will then be made available on the web site so that the web site can become an increasingly useful resource for global epidemiology of these organisms. In order to function as such a resource and to maintain the quality of the data, the databases are hand curated, and all entries will be checked before final entry into the main database.
chlamydia.mlst.net
ST's as HTML
http://chlamydia.mlst.net/sql/refset.asp
Compare your allelic profile to the reference set of ST's. Please enter your QUERY allelic profile in the following format - 1,2,3,4,5,6,7. Ie separated by commas). You must enter 7 digits or you will not be able to see a tree. To use the tree drawing program, please enable Java on your browser.
chlamydia.mlst.net
Concatenation
http://chlamydia.mlst.net/sql/concatenate/default.asp
Sequences are trimmed to the 1 reading frame). CONCATENATE ONE EXAMPLE OF EACH ST in MEGA. To add your own profile a list of all STs. To add your profile to our reference set of STs. THE NUCLEOTIDE SEQUENCES AT THE SEVEN LOCI - Please enter the ST numbers of the STs whose sequences you would like to concatenate, ie 46 for ST46. YOUR OWN ALLELIC PROFILE - Enter your profile below. Below each box is the highest allele number present in the database).
