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Yeast Metabolome Database

About the Yeast Metabolome Database. S cerevisiae Numbers and Stats. YMDB Version 2.0 (beta). The Yeast Metabolome Database (YMDB) is a manually curated database of small molecule metabolites found in or produced by Saccharomyces cerevisiae. Also known as Baker’s yeast and Brewer’s yeast). This database covers metabolites described in textbooks, scientific journals, metabolic reconstructions and other electronic databases. YMDB contains metabolites arising from normal S. cerevisiae. More about the YMDB.

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Yeast Metabolome Database | ymdb.ca Reviews

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About the Yeast Metabolome Database. S cerevisiae Numbers and Stats. YMDB Version 2.0 (beta). The Yeast Metabolome Database (YMDB) is a manually curated database of small molecule metabolites found in or produced by Saccharomyces cerevisiae. Also known as Baker’s yeast and Brewer’s yeast). This database covers metabolites described in textbooks, scientific journals, metabolic reconstructions and other electronic databases. YMDB contains metabolites arising from normal S. cerevisiae. More about the YMDB.

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Yeast Metabolome Database | ymdb.ca Reviews

https://ymdb.ca

About the Yeast Metabolome Database. S cerevisiae Numbers and Stats. YMDB Version 2.0 (beta). The Yeast Metabolome Database (YMDB) is a manually curated database of small molecule metabolites found in or produced by Saccharomyces cerevisiae. Also known as Baker’s yeast and Brewer’s yeast). This database covers metabolites described in textbooks, scientific journals, metabolic reconstructions and other electronic databases. YMDB contains metabolites arising from normal S. cerevisiae. More about the YMDB.

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ymdb.ca

1

Yeast Metabolome Database: Proteins

http://www.ymdb.ca/proteins

About the Yeast Metabolome Database. S cerevisiae Numbers and Stats. Displaying proteins 1 - 25. LysoPC(20:4(5Z,8Z,11Z,14Z). Putative glucosamine- fructose-6-phosphate aminotransferase [isomerizing]. Ceramide synthase subunit LIP1. Cer 18:0;3/22:0;0. Pheromone alpha factor receptor. Ubiquinone biosynthesis protein COQ4, mitochondrial. Mitochondrial distribution and morphology protein 35. Cytochrome b-c1 complex subunit 6. Cytochrome b-c1 complex subunit 7. Cytochrome b2, mitochondrial. Mdash; Contact Us.

2

Yeast Metabolome Database: Advanced Search

http://www.ymdb.ca/unearth/advanced/compounds

About the Yeast Metabolome Database. S cerevisiae Numbers and Stats. Provides a powerful interface for searching the database. You can build up queries that support a wide range of conditions and predicates. To get started, click the "Add Search Condition" button to select your first field. If you add a condition but don't enter anything into the search for that condition,. No search will be applied but the field will show up in the results. Searching for more than one term (for example. Mdash; Contact Us.

3

Yeast Metabolome Database: YMDB Downloads

http://www.ymdb.ca/downloads

About the Yeast Metabolome Database. S cerevisiae Numbers and Stats. YMDB is offered to the public as a freely available resource. Use and re-distribution of the data, in whole or in part, for commercial purposes requires explicit permission of the authors and explicit acknowledgment of the source material (YMDB) and the original publication (see below). We ask that users who download significant portions of the database cite the YMDB paper in any resulting publications. Structures (in SDF Format.

4

Yeast Metabolome Database: Metabolites

http://www.ymdb.ca/compounds

About the Yeast Metabolome Database. S cerevisiae Numbers and Stats. Expected but not quantified. Displaying compounds 1 - 25. 2R,3S,4R,5R)-3,4-dihydroxy-5-(2-formamidoacetamido)oxolan-2-yl]methoxy}phosphonic acid. 2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}phosphonic acid. 1D-Myo-inositol 1,4,5,6-tetrakisphosphate. 1R,2R,3S,4R,5S,6S)-2,3-dihydroxy-4,5,6-tris(phosphonooxy)cyclohexyl]oxy}phosphonic acid. 3S,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-one. Delta 8,14 -Sterol. 3-[(2R...

5

Yeast Metabolome Database: Other Databases

http://www.ymdb.ca/w/databases

About the Yeast Metabolome Database. S cerevisiae Numbers and Stats. The Therapeutic Target Database (TTD) is a drug database designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. The database currently contains 2,025 targets, 17,816 drugs, and 3,681 multi-target agents. STITCH ('search tool for interactions of ...

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metabolomicscentre.ca

The Metabolomics Innovation Centre

http://www.metabolomicscentre.ca/software

The Human Metabolome Database (HMDB). The Toxin and Toxin Target Database (T3DB). Is a unique bioinformatics resource that combines detailed toxin data with comprehensive toxin target information. The database currently houses over 2900 toxins described by over 34 200 synonyms, including pollutants, pesticides, drugs, and food toxins, which are linked to over 1300 corresponding toxin target records. Altogether there are over 33 800 toxin, toxin target associations. The CSF Metabolome database. Is a freel...

wishartlab.com

Web Servers - Wishart Research Group

http://www.wishartlab.com/web_servers

Web Servers and Databases. The Human Metabolome Database. 1 Wishart DS, Tzur D, Knox C, et al., HMDB: the Human Metabolome Database. Nucleic Acids Res. 2007 Jan;35(Database issue):D521-6. 2 Wishart DS, Knox C, Guo AC, et al., HMDB: a knowledgebase for the human metabolome. Nucleic Acids Res. 2009 37(Database issue):D603-610. 3 Wishart DS, Jewison T, Guo AC, Wilson M, Knox C, et al., HMDB 3.0 The Human Metabolome Database in 2013. Nucleic Acids Res. 2013. Jan 1;41(D1):D801-7. 4 Wishart DS, Knox C...

cores.utah.edu

Metabolomics – HSC Cores: Home

http://cores.utah.edu/metabolomics

Iron & Heme. Mass Spectrometry & Proteomics. Mutation Generation & Detection. Biorepository and Molecular Pathology. Biomedical Research Informatics Service Core (BRISC). Clinical Research Compliance and Education. Micron Microscopy and Nanofab. Research Information Services (RISe). Scientific Computing and Imaging Institue (SCI). Transgenic Gene-Targeting Mouse Facility. Image Analysis Core (BIDAC). Scalable Analytics & Informatics (USAI). Office of the AVP for Basic Science. Vice President for Research.

classyfire.wishartlab.com

ClassyFire

http://classyfire.wishartlab.com/about

Taxonomies and ontologies organize complex knowledge about concepts and their relationships. Currently, in contrast to biology, pharmacology, geology, and many other scientific disciplines, the world of chemistry still lacks a standard taxonomy/ontology. Moreover, the manual or semi-automated classification attempts that have been presented so far have proven cost-expensive, error-prone, or not comprehensive enough to provide detailed classifications for the tens of millions of compounds that are...And t...

mzmine.github.io

MZmine 2 - Features

http://mzmine.github.io/features.html

Raw data file formats. Principal Component Analysis (PCA). Curvilinear Distant Analysis (CDA). Raw data file formats. MZmine 2 can read and process both unit mass resolution and exact mass resolution (e.g. FTMS) data in both continuous and centroided modes, including fragmentation (MSn) scans. Supported data formats are:. MzML versions 1.0 and 1.1). MzXML versions 2.0 to 3.1). MzData versions 1.04 and 1.05). Peak detection is performed in a three-step manner: first, mass values are detected within each s...

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ymdb.ca

Yeast Metabolome Database

About the Yeast Metabolome Database. S cerevisiae Numbers and Stats. YMDB Version 2.0 (beta). The Yeast Metabolome Database (YMDB) is a manually curated database of small molecule metabolites found in or produced by Saccharomyces cerevisiae. Also known as Baker’s yeast and Brewer’s yeast). This database covers metabolites described in textbooks, scientific journals, metabolic reconstructions and other electronic databases. YMDB contains metabolites arising from normal S. cerevisiae. More about the YMDB.

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