scmd.gi.k.u-tokyo.ac.jp

SCMD Saccharomyces Cerevisiae Morphological Database

Teardrop View of ORF Parameters. Teardrop View of Average Shapes Grouped by. Is a collection of micrographs of budding yeast mutants. Micorgraphs of mutants with altered cell morphology were taken at Ohya Group. From a set of the haploid MATa deleted strains obtained from EUROSCARF. From the micrographs, disruptant cells are automatically extracted by our novel cell-image processing software developed at Morishita Group. Scerevisiae, yeast, bioinformatics, data mining.

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SCMD Saccharomyces Cerevisiae Morphological Database | scmd.gi.k.u-tokyo.ac.jp Reviews

<META> DESCRIPTION

Teardrop View of ORF Parameters. Teardrop View of Average Shapes Grouped by. Is a collection of micrographs of budding yeast mutants. Micorgraphs of mutants with altered cell morphology were taken at Ohya Group. From a set of the haploid MATa deleted strains obtained from EUROSCARF. From the micrographs, disruptant cells are automatically extracted by our novel cell-image processing software developed at Morishita Group. Scerevisiae, yeast, bioinformatics, data mining.

<META> KEYWORDS

1 mutant list

2 parameter help

3 photo

4 photo viewer

5 individual cell datasheet

6 cells grouped by

7 bud size

8 nucleus location

9 actin distribution

10 data mining

CONTENT

Page content here

KEYWORDS ON PAGE

mutant list,parameter help,photo,photo viewer,individual cell datasheet,cells grouped by,bud size,nucleus location,actin distribution,data mining,morphology search,orf parameter datasheet,2d plot,average shapes,download,image processing software,site map

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SCMD Saccharomyces Cerevisiae Morphological Database | scmd.gi.k.u-tokyo.ac.jp Reviews

https://scmd.gi.k.u-tokyo.ac.jp

Teardrop View of ORF Parameters. Teardrop View of Average Shapes Grouped by. Is a collection of micrographs of budding yeast mutants. Micorgraphs of mutants with altered cell morphology were taken at Ohya Group. From a set of the haploid MATa deleted strains obtained from EUROSCARF. From the micrographs, disruptant cells are automatically extracted by our novel cell-image processing software developed at Morishita Group. Scerevisiae, yeast, bioinformatics, data mining.

INTERNAL PAGES

scmd.gi.k.u-tokyo.ac.jp

1

SCMD About SCMD

http://scmd.gi.k.u-tokyo.ac.jp/datamine/about.jsp;jsessionid=91B3853EFD54D64DF301509C3E3129BF

Teardrop View of ORF Parameters. Teardrop View of Average Shapes Grouped by. When users publish the analysis of individual genes using the data of this site, they should include the acknowledgement "The SCMD database has been provided freely by the University of Tokyo for use in this publication/correspondence only.". Finally, we are continuing to improve the SCMD database; therefore, any feedback information from the users should be highly welcomed. Ohya Laboratory ( homepage. Taro L. Saito. Miwaka Ohta...

2

SCMD CalMorph

http://scmd.gi.k.u-tokyo.ac.jp/datamine/calmorph;jsessionid=91B3853EFD54D64DF301509C3E3129BF

Teardrop View of ORF Parameters. Teardrop View of Average Shapes Grouped by. CalMorph is a program that outputs a large amount of data on cell cycle phase, cell forms, etc., for individual cells, from a set of pictures of cell walls, cell nuclei, and actins. Download CalMorph Version 1.1. Download CalMorph Version 1.2 (2006 Jul. 10th). CalMorph requres Java 1.4.2 or later. Sample micrographs: his3.zip. The zip file contains 57 photos. 19 ConA photos (his3-C1.jpg,.,his3-C19.jpg). On Mac OS X. Miwaka Ohtan...

3

SCMD Site Map

http://scmd.gi.k.u-tokyo.ac.jp/datamine/sitemap.jsp;jsessionid=91B3853EFD54D64DF301509C3E3129BF

Teardrop View of ORF Parameters. Teardrop View of Average Shapes Grouped by. You can select all menus described below from the above drop-down menu bar. Display a list of yeast mutants available in SCMD. Display micrographs of yeast mutants stained with ConA, DAPI and Rh-Ph. Show individual cells and their morphological prameters (cell parameters) in the micrographs. Cells Grouped by bud size. Show cells grouped by morphological conditions such as bud size, nucleus location and action distributions.

4

SCMD Saccharomyces Cerevisiae Morphological Database

http://scmd.gi.k.u-tokyo.ac.jp/datamine/;jsessionid=91B3853EFD54D64DF301509C3E3129BF

Teardrop View of ORF Parameters. Teardrop View of Average Shapes Grouped by. Is a collection of micrographs of budding yeast mutants. Micorgraphs of mutants with altered cell morphology were taken at Ohya Group. From a set of the haploid MATa deleted strains obtained from EUROSCARF. From the micrographs, disruptant cells are automatically extracted by our novel cell-image processing software developed at Morishita Group. Scerevisiae, yeast, bioinformatics, data mining.

5

SCMD Morphology Search

http://scmd.gi.k.u-tokyo.ac.jp/datamine/SelectShape.do;jsessionid=91B3853EFD54D64DF301509C3E3129BF

Teardrop View of ORF Parameters. Teardrop View of Average Shapes Grouped by. Please select or input some parameter values below to find yeast mutants which are similar in shape. The bud area ratio. Bud area ratio = daughtor cell area / mother cell area. 00 - 1.0). Weight of this parameter:. If this parameter does not matter to what you wish, please select 0:.

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mlab.cb.k.u-tokyo.ac.jp

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http://mlab.cb.k.u-tokyo.ac.jp/software

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yeast.gi.k.u-tokyo.ac.jp

SCMD Saccharomyces Cerevisiae Morphological Database

http://yeast.gi.k.u-tokyo.ac.jp/datamine/.;jsessionid=958A21C49B7127A140DEDAF3DECC9AD9

Teardrop View of ORF Parameters. Teardrop View of Average Shapes Grouped by. Is a collection of micrographs of budding yeast mutants. Micorgraphs of mutants with altered cell morphology were taken at Ohya Group. From a set of the haploid MATa deleted strains obtained from EUROSCARF. From the micrographs, disruptant cells are automatically extracted by our novel cell-image processing software developed at Morishita Group. Scerevisiae, yeast, bioinformatics, data mining.

yeast.gi.k.u-tokyo.ac.jp

SCMD Saccharomyces Cerevisiae Morphological Database

http://yeast.gi.k.u-tokyo.ac.jp/datamine/;jsessionid=958A21C49B7127A140DEDAF3DECC9AD9

Teardrop View of ORF Parameters. Teardrop View of Average Shapes Grouped by. Is a collection of micrographs of budding yeast mutants. Micorgraphs of mutants with altered cell morphology were taken at Ohya Group. From a set of the haploid MATa deleted strains obtained from EUROSCARF. From the micrographs, disruptant cells are automatically extracted by our novel cell-image processing software developed at Morishita Group. Scerevisiae, yeast, bioinformatics, data mining.

yeastcolloquium.wordpress.com

4月 | 2013 | 酵母コロキアム

https://yeastcolloquium.wordpress.com/2013/04

Yeast Colloquium: think next of yeast biology. のディスカッションで、プラズモダクションとプラスミドを用いた遺伝子破壊を組み合わせる事で、Synthetic Genetic Array (SGA)およびその関連技術を改善する事が出来るのではないか、という提言をしました。は、Yeast ORF-deletion collectionやORF-overexpression collectionなどを使い、大量の遺伝子相互作用を網羅的に解析する手法. １酵母の全ORFについて、バーコード付き遺伝子破壊カセット両端にI-SceI制限酵素認識配列付きをGAL-I-SceIプラスミド (. ２ドナー株からプラスミドをレシピエント株にプラズモダクションで移動させる. A) 最終的に破壊された株はレシピエント株とisogenicになるため、接合胞子形成を介するSGAよりも均質なポピュレーションが得られる。 B) ドナー株と接合できるかぎり、どのような株でもレシピエント株として使用可能。酵母の成功に触発されて、遺伝子単位でのノックアウトノックダ...

yeastcolloquium.wordpress.com

yeastcolloquium | 酵母コロキアム

https://yeastcolloquium.wordpress.com/author/yeastcolloquium

Yeast Colloquium: think next of yeast biology. 酵母勃興分子生物学会年会でワークショップ酵母ルネッサンスをやります. 1PW14 第 14 会場神戸国際展示場 2 号館 3 階 3B 会議室. オーガナイザー守屋央朗岡山大学，吉田知史ブランダイス大学. 13:15 Introduction 守屋央朗岡山大学. 13:20 1PW14-1 酵母で明らかにする、細胞が傷を治すメカニズム河野恵子，折井みなみ，温欣宜，中西真名市大医. 13:38 1PW14-2 酵母だから測れる、過剰発現のコピー数限界守屋央朗岡大異分野コア. 13:56 1PW14-3 酵母をとおしてみたゲノム維持の素顔飯田哲史1,2,4，飯田直子 3,6，中嶋映里香1,2，瀬々潤5，中村保一 3,6，小林武彦1,4 1 国立遺伝研細胞遺伝，2JST さきがけ，3 国立遺伝研大量遺伝情報，4総研大，5東工大理工計算工学，6DDBJ. ２ドナー株からプラスミドをレシピエント株にプラズモダクションで移動させる. その他にも、...

xerial.org

Taro L. Saito, Ph.D. | xerial.org

http://xerial.org/leo

Taro L. Saito. Taro L. Saito, Ph.D. Software Engineer at Treasure Data, Inc. Language Skills: Scala (current favorite), Java, C/C , Ruby, Perl, R, Scheme, OCaml, Z80, etc. GitHub https:/ github.com/xerial. BitBucket https:/ bitbucket.org/xerial. Tutorial of the Scala programming language. Presentation Slides @ SlideShare. Leo's Chronicle (in Japanese): http:/ leoclock.blogspot.com. Xerial Blog: http:/ voice.xerial.org. April 2005 - March 2007. April 2007 - February 2014. March 2014 - June 2015. MachiBase...

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Genome Sciences | xerial.org

http://xerial.org/genome-science

Taro L. Saito. Cluser Computing Platform for Genome Sciences. Personal genome analysis involves massive amount of data analysis: genome sequence alignment, SNP calls, finding desease-related mutations, etc. These data analysis involves tons of data managment (e.g., compression, file I/O, table joins, filtering, etc.) Silk supports running these complex data analysis pipeline in a cluster machine. Genome browsers developed by UTGB. The Primary Transcriptome of. This is due to the high frequency of trans-s...

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Publications | xerial.org

http://xerial.org/publication

Taro L. Saito. Taro L. Saito. Toshiya Nishimura, Amaury Herpin, Tetsuaki Kimura, Ikuyo Hara, Toshihiro Kawasaki, Shuhei Nakamura, Yasuhiro Yamamoto, Taro L. Saito. Jun Yoshimura, Shinichi Morishita, Tatsuya Tsukahara, Satoru Kobayashi, Kiyoshi Naruse, Shuji Shigenobu, Noriyoshi Sakai, Manfred Schartl, and Minoru Tanaka. Analysis of a novel gene, Sdgc, reveals sex chromosome-dependent differences of medaka germ cells prior to gonad formation. July 30, 2014, doi:10.1242/dev.106864. Taro L. Saito. Matthias ...

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SCMD Saccharomyces Cerevisiae Morphological Database

Teardrop View of ORF Parameters. Teardrop View of Average Shapes Grouped by. Is a collection of micrographs of budding yeast mutants. Micorgraphs of mutants with altered cell morphology were taken at Ohya Group. From a set of the haploid MATa deleted strains obtained from EUROSCARF. From the micrographs, disruptant cells are automatically extracted by our novel cell-image processing software developed at Morishita Group. Scerevisiae, yeast, bioinformatics, data mining.

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Datele de contact ale absolventilor (in ordine alfabetica). Botez M. Dan, loc. Valea Adanca, com. Miroslava , str. Veche, nr. 148, jud.Iasi, tel. 0740987493 si 0232 222093, e-mail : dan botez56@yahoo.com. Olteanu Costica, Cpt. Cdor (r), Bacau, str. Bucegi, bl. 137, ap. 22, olteanu costica@yahoo.com. Tanase C. Vasile, Cpt. Cdor (r), Bacau, str. Martir Closca, nr.6, bl. 6, sc.A, ap.9, et.IV, tel. 0740328891 , vio tase21@yahoo.com. Duminică, 20 iunie 2010. Clasa a XII-a A. Diriginte: prof. Popa Floarea.